| Literature DB >> 26259616 |
Sonia Tehseen1, Nusrat Jahan2, Muhammad Fiaz Qamar3, Marc Desquesnes4, Mirza Imran Shahzad5, Stijn Deborggraeve6, Philippe Büscher7.
Abstract
BACKGROUND: Surra, a vector borne disease caused by Trypanosoma (T.) evansi, affects the health, productivity and working capacity of camels. Since clinical signs are not pathognomonic, diagnosis must be confirmed by laboratory methods. This is a first study on the prevalence of surra in Cholistan Desert, Pakistan using a broad variety of diagnostic tests thereby emphasizing it as a risk for the dromedaries of Pakistan.Entities:
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Year: 2015 PMID: 26259616 PMCID: PMC4532143 DOI: 10.1186/s13071-015-1002-3
Source DB: PubMed Journal: Parasit Vectors ISSN: 1756-3305 Impact factor: 3.876
Fig. 1Map of Pakistan with the Cholistan Desert and the three districts. Localisation of sampling sites is shown in red dots
Details on the primers used in the molecular tests
| Name | Specificity | Target | Primersequence | Reference |
|---|---|---|---|---|
| TBR1/2 |
| Minichromosome satellite repetitive sequence | TBR1-F:5’GAATATTAAACAATGCGCAG 3’ | [ |
| TBR2-R:5’CCATTTATTAGCTTTGTTGC 3’ | ||||
| RoTat 1.2 |
| RoTat 1.2 VSG | RoTat-F:5’-GCGGGGTGTTTAAAGCAATA-3 | [ |
| RoTat-R:5’-ATTAGTGCTGCGTGTGTTCG-3 | ||||
| Eva B |
| Minicircle genes | EVAB1-5’CACAGTCCGAGAGATAGAG-3 | [ |
| EVAB2-5’CTGTACTCTACATCTACCTC-3 |
Cross-tables and degree of agreement between the different diagnostic tests. TL = immune trypanolysis, GST = Giemsa stained thin smear, FGT = formol gel test, TL = immune trypanolysis, CATT = CATT/T. evansi, ELISA = ELISA/VSG RoTat 1.2, pos = positive, neg = negative, CI = 95 % confidence interval, k = kappa with the following interpretation of agreement: <0 = poor, 0–0.2 = slight, 0.21-0.4 = fair, 0.41-0.6 = moderate, 0.61-0.8 = substantial, 0.81-1 = almost perfect
| FGT | CATT | ELISA | TL | TBR1/2 | RoTat 1.2 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| pos | Neg | pos | neg | pos | neg | pos | neg | pos | neg | pos | neg | ||
| GST | pos | 7 | 0 | 7 | 0 | 1 | 6 | 7 | 0 | 7 | 0 | 7 | 0 |
| neg | 396 | 602 | 472 | 526 | 443 | 555 | 394 | 604 | 314 | 684 | 300 | 698 | |
| k (95 % CI) | 0.02 (0–0.096) | 0.02 (0–0.080) | <0 | 0.02 (0–0.096) | 0.03 (0–0.119) | 0.03 (0–0.123) | |||||||
| FGT | pos | 222 | 181 | 164 | 239 | 192 | 211 | 114 | 289 | 113 | 290 | ||
| neg | 257 | 345 | 280 | 322 | 209 | 393 | 207 | 395 | 194 | 408 | |||
| k (95 % CI) | 0.12 (0.058-0.182) | <0 | 0.13 (0.066-0.193) | <0 | <0 | ||||||||
| CATT | pos | 301 | 178 | 299 | 180 | 157 | 322 | 152 | 327 | ||||
| neg | 143 | 383 | 102 | 424 | 164 | 362 | 155 | 371 | |||||
| k (95 % CI) | 0.36 (0.300-0.416) | 0.43 (0.378-0.490) | 0.02 (0–0.079) | 0.02 (0–0.086) | |||||||||
| ELISA | pos | 310 | 134 | 142 | 302 | 137 | 307 | ||||||
| neg | 91 | 470 | 179 | 382 | 170 | 391 | |||||||
| k (95 % CI) | 0.54 (0.489-0.594) | 0.00 (0–0.065) | 0.01 (0–0.070) | ||||||||||
| TL | pos | 136 | 265 | 131 | 270 | ||||||||
| neg | 185 | 419 | 176 | 428 | |||||||||
| k (95 % CI) | 0.04 (0–0.100) | 0.04 (0–0.103) | |||||||||||
| TBR1/2 | pos | 307 | 14 | ||||||||||
| neg | 0 | 684 | |||||||||||
| k (95 % CI) | 0.97 (0.951-0.985) | ||||||||||||
Number and percentage (%) of positive samples in the different diagnostic tests. Data are arranged according to district, breed, gender and age group. GST = Giemsa stained thin smear, FGT = formol gel test, TL = immune trypanolysis, CATT = CATT/T. evansi, ELISA = ELISA/VSG RoTat 1.2, pos = positive, neg = negative
| GST | FGT | CATT | ELISA | TL | TBR1/2 | RoTat1.2 | |||
|---|---|---|---|---|---|---|---|---|---|
| Total | pos (%) | pos (%) | pos (%) | Pos (%) | pos (%) | pos (%) | pos (%) | ||
| District | Bahawalpur | 420 | 7 (1.1) | 259 (61.7) | 224 (53.3) | 210 (50.0) | 205 (48.8) | 95 (22.6) | 94 (22.4) |
| Bahawalnagar | 399 | 0 (0.0) | 144 (36.1) | 202 (50.6) | 156 (39.1) | 13 7(34.3) | 155(38.9) | 152 (38.1) | |
| Rahim Yar Khan | 186 | 0 (0.0) | 0 (0.0) | 53 (28.5) | 78 (41.9) | 59 (31.7) | 68 (36.6) | 58 (31.2) | |
| Breed | Brella | 420 | 3 (0.7) | 245 (58.3) | 201 (47.9) | 171 (40.7) | 166 (39.5) | 119 (28.30) | 118 (28.1) |
| Mareecha | 585 | 4 (0.7) | 158 (27.0) | 307 (52.5) | 273 (46.7) | 235 (40.2) | 199 (34.0) | 186 (31.8) | |
| Gender | Male | 440 | 1 (0.2) | 105 (23.9) | 196 (44.5) | 200 (45.5) | 153 (34.8) | 164 (37.3) | 155 (35.2) |
| Female | 565 | 6 (1.1) | 298 (52.7) | 283 (50.1) | 244 (43.2) | 248 (43.9) | 154 (27.3) | 149 (26.4) | |
| Age | Adult | 659 | 7 (1.1) | 302 (45.8) | 328 (49.8) | 295 (44.8) | 267 (40.5) | 214 (32.5) | 208 (31.6) |
| Young | 187 | 0 (0.0) | 64 (34.0) | 90 (48.1) | 82 (43.9) | 70 (37.4) | 53 (28.3) | 49 (26.2) | |
| Calf | 159 | 0 (0.0) | 37 (23.3) | 61 (36.4) | 67 (42.1) | 64 (40.1) | 51 (32.1) | 47 (29.6) | |
| Total | 1005 | 7 (0.7) | 403 (40.1) | 479 (47.7) | 444 (44.2) | 401 (39.9) | 321 (31.9) | 307 (30.5) |
Fig. 2Mean PCV with standard deviation according to status in the different diagnostic tests. GST = Giemsa stained thin smear, FGT = formol gel test, TL = immune trypanolysis, CATT = CATT/T. evansi, ELISA = ELISA/VSG RoTat 1.2, pos = positive, neg = negative. * = significant difference between positives and negatives (p < 0.05)