Literature DB >> 26259544

Mapping Mechanical Force Propagation through Biomolecular Complexes.

Constantin Schoeler1, Rafael C Bernardi2, Klara H Malinowska1, Ellis Durner1, Wolfgang Ott1,3, Edward A Bayer4, Klaus Schulten2,5, Michael A Nash1, Hermann E Gaub1.   

Abstract

Here we employ single-molecule force spectroscopy with an atomic force microscope (AFM) and steered molecular dynamics (SMD) simulations to reveal force propagation pathways through a mechanically ultrastable multidomain cellulosome protein complex. We demonstrate a new combination of network-based correlation analysis supported by AFM directional pulling experiments, which allowed us to visualize stiff paths through the protein complex along which force is transmitted. The results implicate specific force-propagation routes nonparallel to the pulling axis that are advantageous for achieving high dissociation forces.

Entities:  

Keywords:  Force propagation; cohesin−dockerin; network analysis; single molecule force spectroscopy; steered molecular dynamics

Mesh:

Substances:

Year:  2015        PMID: 26259544      PMCID: PMC4721519          DOI: 10.1021/acs.nanolett.5b02727

Source DB:  PubMed          Journal:  Nano Lett        ISSN: 1530-6984            Impact factor:   11.189


  44 in total

1.  Pulling geometry defines the mechanical resistance of a beta-sheet protein.

Authors:  David J Brockwell; Emanuele Paci; Rebecca C Zinober; Godfrey S Beddard; Peter D Olmsted; D Alastair Smith; Richard N Perham; Sheena E Radford
Journal:  Nat Struct Biol       Date:  2003-08-17

2.  Energy propagation and network energetic coupling in proteins.

Authors:  Andre A S T Ribeiro; Vanessa Ortiz
Journal:  J Phys Chem B       Date:  2015-01-21       Impact factor: 2.991

3.  Interpreting the widespread nonlinear force spectra of intermolecular bonds.

Authors:  Raymond W Friddle; Aleksandr Noy; James J De Yoreo
Journal:  Proc Natl Acad Sci U S A       Date:  2012-08-06       Impact factor: 11.205

Review 4.  Molecular dynamics simulations of membrane channels and transporters.

Authors:  Fatemeh Khalili-Araghi; James Gumbart; Po-Chao Wen; Marcos Sotomayor; Emad Tajkhorshid; Klaus Schulten
Journal:  Curr Opin Struct Biol       Date:  2009-04-01       Impact factor: 6.809

Review 5.  Mechanics, malignancy, and metastasis: the force journey of a tumor cell.

Authors:  Sanjay Kumar; Valerie M Weaver
Journal:  Cancer Metastasis Rev       Date:  2009-06       Impact factor: 9.264

6.  Exploring residue component contributions to dynamical network models of allostery.

Authors:  Adam T Vanwart; John Eargle; Zaida Luthey-Schulten; Rommie E Amaro
Journal:  J Chem Theory Comput       Date:  2012-07-05       Impact factor: 6.006

7.  Stretching single talin rod molecules activates vinculin binding.

Authors:  Armando del Rio; Raul Perez-Jimenez; Ruchuan Liu; Pere Roca-Cusachs; Julio M Fernandez; Michael P Sheetz
Journal:  Science       Date:  2009-01-30       Impact factor: 63.714

8.  Mechanical network in titin immunoglobulin from force distribution analysis.

Authors:  Wolfram Stacklies; M Cristina Vega; Matthias Wilmanns; Frauke Gräter
Journal:  PLoS Comput Biol       Date:  2009-03-13       Impact factor: 4.475

9.  How force might activate talin's vinculin binding sites: SMD reveals a structural mechanism.

Authors:  Vesa P Hytönen; Viola Vogel
Journal:  PLoS Comput Biol       Date:  2008-02       Impact factor: 4.475

10.  An allosteric signaling pathway of human 3-phosphoglycerate kinase from force distribution analysis.

Authors:  Zoltan Palmai; Christian Seifert; Frauke Gräter; Erika Balog
Journal:  PLoS Comput Biol       Date:  2014-01-23       Impact factor: 4.475

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  26 in total

1.  Type III secretion system effector proteins are mechanically labile.

Authors:  Marc-André LeBlanc; Morgan R Fink; Thomas T Perkins; Marcelo C Sousa
Journal:  Proc Natl Acad Sci U S A       Date:  2021-03-23       Impact factor: 11.205

2.  Dynamic interactions of type I cohesin modules fine-tune the structure of the cellulosome of Clostridium thermocellum.

Authors:  Anders Barth; Jelle Hendrix; Daniel Fried; Yoav Barak; Edward A Bayer; Don C Lamb
Journal:  Proc Natl Acad Sci U S A       Date:  2018-11-14       Impact factor: 11.205

Review 3.  Cellulosomes: bacterial nanomachines for dismantling plant polysaccharides.

Authors:  Lior Artzi; Edward A Bayer; Sarah Moraïs
Journal:  Nat Rev Microbiol       Date:  2016-12-12       Impact factor: 60.633

4.  PyContact: Rapid, Customizable, and Visual Analysis of Noncovalent Interactions in MD Simulations.

Authors:  Maximilian Scheurer; Peter Rodenkirch; Marc Siggel; Rafael C Bernardi; Klaus Schulten; Emad Tajkhorshid; Till Rudack
Journal:  Biophys J       Date:  2018-02-06       Impact factor: 4.033

Review 5.  Model systems for optical trapping: the physical basis and biological applications.

Authors:  Ilya Konyshev; Andrey Byvalov
Journal:  Biophys Rev       Date:  2021-07-27

6.  Mapping the deformability of natural and designed cellulosomes in solution.

Authors:  Jonathan Dorival; Sarah Moraïs; Aurore Labourel; Bartosz Rozycki; Pierre-Andre Cazade; Jérôme Dabin; Eva Setter-Lamed; Itzhak Mizrahi; Damien Thompson; Aurélien Thureau; Edward A Bayer; Mirjam Czjzek
Journal:  Biotechnol Biofuels Bioprod       Date:  2022-06-20

7.  Non-syndromic Mitral Valve Dysplasia Mutation Changes the Force Resilience and Interaction of Human Filamin A.

Authors:  Tatu J K Haataja; Rafael C Bernardi; Simon Lecointe; Romain Capoulade; Jean Merot; Ulla Pentikäinen
Journal:  Structure       Date:  2018-10-18       Impact factor: 5.006

8.  Direction Matters: Monovalent Streptavidin/Biotin Complex under Load.

Authors:  Steffen M Sedlak; Leonard C Schendel; Marcelo C R Melo; Diana A Pippig; Zaida Luthey-Schulten; Hermann E Gaub; Rafael C Bernardi
Journal:  Nano Lett       Date:  2018-10-26       Impact factor: 11.189

9.  Combining in Vitro and in Silico Single-Molecule Force Spectroscopy to Characterize and Tune Cellulosomal Scaffoldin Mechanics.

Authors:  Tobias Verdorfer; Rafael C Bernardi; Aylin Meinhold; Wolfgang Ott; Zaida Luthey-Schulten; Michael A Nash; Hermann E Gaub
Journal:  J Am Chem Soc       Date:  2017-11-03       Impact factor: 15.419

10.  QwikMD - Integrative Molecular Dynamics Toolkit for Novices and Experts.

Authors:  João V Ribeiro; Rafael C Bernardi; Till Rudack; John E Stone; James C Phillips; Peter L Freddolino; Klaus Schulten
Journal:  Sci Rep       Date:  2016-05-24       Impact factor: 4.379

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