Literature DB >> 34471436

Model systems for optical trapping: the physical basis and biological applications.

Ilya Konyshev1,2, Andrey Byvalov1,2.   

Abstract

The micromechanical methods, among which optical trapping and atomic force microscopy have a special place, are widespread currently in biology to study molecular interactions between different biological objects. Optical trapping is reported to be quite applicable to study the mechanical properties of surface structures onto bacterial (pili and flagella) and eukaryotic (filopodia) cells. The review briefly summarizes the physical basis of optical trapping, as well as the principles of calculating the van der Waals, electrostatic, and donor-acceptor forces when two microparticles or a microparticle and a flat surface are used. Three main types of model systems (abiotic, biotic, and mixed) used in trapping experiments are described, and the peculiarities of manipulation with living (bacteria, fungal spores, etc.) and non-spherical objects (e.g., rod-shaped bacteria) are summarized. © International Union for Pure and Applied Biophysics (IUPAB) and Springer-Verlag GmbH Germany, part of Springer Nature 2021.

Entities:  

Keywords:  Antibody; Antigen; Interaction force; Model system; Molecular interaction; Optical trap

Year:  2021        PMID: 34471436      PMCID: PMC8355282          DOI: 10.1007/s12551-021-00823-8

Source DB:  PubMed          Journal:  Biophys Rev        ISSN: 1867-2450


  82 in total

Review 1.  Adhesins Involved in Attachment to Abiotic Surfaces by Gram-Negative Bacteria.

Authors:  Cécile Berne; Adrien Ducret; Gail G Hardy; Yves V Brun
Journal:  Microbiol Spectr       Date:  2015-08

2.  Influence of surface energy of modified surfaces on bacterial adhesion.

Authors:  Y Liu; Q Zhao
Journal:  Biophys Chem       Date:  2005-08-22       Impact factor: 2.352

Review 3.  Conserved and variable structural features in the lipopolysaccharide of Pseudomonas aeruginosa.

Authors:  Yuriy A Knirel; Olga V Bystrova; Nina A Kocharova; Ulrich Zähringer; Gerald B Pier
Journal:  J Endotoxin Res       Date:  2006

4.  Force and velocity measured for single molecules of RNA polymerase.

Authors:  M D Wang; M J Schnitzer; H Yin; R Landick; J Gelles; S M Block
Journal:  Science       Date:  1998-10-30       Impact factor: 47.728

5.  Direct observation of the fast and robust folding of a slipknotted protein by optical tweezers.

Authors:  Chengzhi He; Shuai Li; Xiaoqing Gao; Adam Xiao; Chunguang Hu; Xiaodong Hu; Xiaotang Hu; Hongbin Li
Journal:  Nanoscale       Date:  2019-02-14       Impact factor: 7.790

6.  Quantitation of malaria parasite-erythrocyte cell-cell interactions using optical tweezers.

Authors:  Alex J Crick; Michel Theron; Teresa Tiffert; Virgilio L Lew; Pietro Cicuta; Julian C Rayner
Journal:  Biophys J       Date:  2014-08-19       Impact factor: 4.033

7.  Knotting and unknotting of a protein in single molecule experiments.

Authors:  Fabian Ziegler; Nicole C H Lim; Soumit Sankar Mandal; Benjamin Pelz; Wei-Ping Ng; Michael Schlierf; Sophie E Jackson; Matthias Rief
Journal:  Proc Natl Acad Sci U S A       Date:  2016-06-23       Impact factor: 11.205

8.  Determining the specificity of monoclonal antibody HPT-101 to tau-peptides with optical tweezers.

Authors:  Tim Stangner; Carolin Wagner; David Singer; Stefano Angioletti-Uberti; Christof Gutsche; Joachim Dzubiella; Ralf Hoffmann; Friedrich Kremer
Journal:  ACS Nano       Date:  2013-12-02       Impact factor: 15.881

9.  Single-Molecule Measurements of Motor-Driven Viral DNA Packaging in Bacteriophages Phi29, Lambda, and T4 with Optical Tweezers.

Authors:  Nicholas Keller; Damian J delToro; Douglas E Smith
Journal:  Methods Mol Biol       Date:  2018

Review 10.  Controlled Mechanical Motions of Microparticles in Optical Tweezers.

Authors:  Jing Liu; Zhiyuan Li
Journal:  Micromachines (Basel)       Date:  2018-05-12       Impact factor: 2.891

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  1 in total

1.  Genesis of Open States Zones in a DNA Molecule Depends on the Localization and Value of the Torque.

Authors:  Stepan Dzhimak; Alexandr Svidlov; Anna Elkina; Eugeny Gerasimenko; Mikhail Baryshev; Mikhail Drobotenko
Journal:  Int J Mol Sci       Date:  2022-04-17       Impact factor: 6.208

  1 in total

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