Literature DB >> 26249694

Overproduction, crystallization and X-ray diffraction data analysis of ectoine synthase from the cold-adapted marine bacterium Sphingopyxis alaskensis.

Stefanie Kobus1, Nils Widderich2, Astrid Hoeppner1, Erhard Bremer2, Sander H J Smits3.   

Abstract

Ectoine biosynthetic genes (ectABC) are widely distributed in bacteria. Microorganisms that carry them make copious amounts of ectoine as a cell protectant in response to high-osmolarity challenges. Ectoine synthase (EctC; EC 4.2.1.108) is the key enzyme for the production of this compatible solute and mediates the last step of ectoine biosynthesis. It catalyzes the ring closure of the cyclic ectoine molecule. A codon-optimized version of ectC from Sphingopyxis alaskensis (Sa) was used for overproduction of SaEctC protein carrying a Strep-tag II peptide at its carboxy-terminus. The recombinant SaEctC-Strep-tag II protein was purified to near-homogeneity from Escherichia coli cell extracts by affinity chromatography. Size-exclusion chromatography revealed that it is a dimer in solution. The SaEctC-Strep-tag II protein was crystallized using the sitting-drop vapour-diffusion method and crystals that diffracted to 1.0 Å resolution were obtained.

Entities:  

Keywords:  X-ray analysis; chemical chaperone; compatible solute; cupin; ectoine synthesis; enzyme; osmostress protectant

Mesh:

Substances:

Year:  2015        PMID: 26249694      PMCID: PMC4528936          DOI: 10.1107/S2053230X15011115

Source DB:  PubMed          Journal:  Acta Crystallogr F Struct Biol Commun        ISSN: 2053-230X            Impact factor:   1.056


  24 in total

1.  EDNA: a framework for plugin-based applications applied to X-ray experiment online data analysis.

Authors:  Marie-Françoise Incardona; Gleb P Bourenkov; Karl Levik; Romeu A Pieritz; Alexander N Popov; Olof Svensson
Journal:  J Synchrotron Radiat       Date:  2009-10-07       Impact factor: 2.616

2.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

3.  Ectoine and hydroxyectoine as protectants against osmotic and cold stress: uptake through the SigB-controlled betaine-choline- carnitine transporter-type carrier EctT from Virgibacillus pantothenticus.

Authors:  Anne U Kuhlmann; Tamara Hoffmann; Jan Bursy; Mohamed Jebbar; Erhard Bremer
Journal:  J Bacteriol       Date:  2011-07-15       Impact factor: 3.490

4.  Characterization of genes for the biosynthesis of the compatible solute ectoine from Marinococcus halophilus and osmoregulated expression in Escherichia coli.

Authors:  Petra Louis; Erwin A Galinski
Journal:  Microbiology (Reading)       Date:  1997-04       Impact factor: 2.777

5.  Characterization of the ectoine biosynthesis genes of haloalkalotolerant obligate methanotroph "Methylomicrobium alcaliphilum 20Z".

Authors:  Alexander S Reshetnikov; Valentina N Khmelenina; Yuri A Trotsenko
Journal:  Arch Microbiol       Date:  2005-11-10       Impact factor: 2.552

6.  Integration, scaling, space-group assignment and post-refinement.

Authors:  Wolfgang Kabsch
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-01-22

7.  1,4,5,6-Tetrahydro-2-methyl-4-pyrimidinecarboxylic acid. A novel cyclic amino acid from halophilic phototrophic bacteria of the genus Ectothiorhodospira.

Authors:  E A Galinski; H P Pfeiffer; H G Trüper
Journal:  Eur J Biochem       Date:  1985-05-15

Review 8.  Uptake and synthesis of compatible solutes as microbial stress responses to high-osmolality environments.

Authors:  B Kempf; E Bremer
Journal:  Arch Microbiol       Date:  1998-10       Impact factor: 2.552

9.  Overexpression, crystallization and preliminary X-ray crystallographic analysis of the ectoine hydroxylase from Sphingopyxis alaskensis.

Authors:  Astrid Hoeppner; Nils Widderich; Erhard Bremer; Sander H J Smits
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-03-25       Impact factor: 1.056

10.  Glass-forming property of hydroxyectoine is the cause of its superior function as a desiccation protectant.

Authors:  Christoph Tanne; Elena A Golovina; Folkert A Hoekstra; Andrea Meffert; Erwin A Galinski
Journal:  Front Microbiol       Date:  2014-04-04       Impact factor: 5.640

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  3 in total

1.  The architecture of the diaminobutyrate acetyltransferase active site provides mechanistic insight into the biosynthesis of the chemical chaperone ectoine.

Authors:  Alexandra A Richter; Stefanie Kobus; Laura Czech; Astrid Hoeppner; Jan Zarzycki; Tobias J Erb; Lukas Lauterbach; Jeroen S Dickschat; Erhard Bremer; Sander H J Smits
Journal:  J Biol Chem       Date:  2020-01-22       Impact factor: 5.157

2.  Biochemistry and Crystal Structure of Ectoine Synthase: A Metal-Containing Member of the Cupin Superfamily.

Authors:  Nils Widderich; Stefanie Kobus; Astrid Höppner; Ramona Riclea; Andreas Seubert; Jeroen S Dickschat; Johann Heider; Sander H J Smits; Erhard Bremer
Journal:  PLoS One       Date:  2016-03-17       Impact factor: 3.240

3.  Illuminating the catalytic core of ectoine synthase through structural and biochemical analysis.

Authors:  Laura Czech; Astrid Höppner; Stefanie Kobus; Andreas Seubert; Ramona Riclea; Jeroen S Dickschat; Johann Heider; Sander H J Smits; Erhard Bremer
Journal:  Sci Rep       Date:  2019-01-23       Impact factor: 4.379

  3 in total

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