Literature DB >> 19844027

EDNA: a framework for plugin-based applications applied to X-ray experiment online data analysis.

Marie-Françoise Incardona1, Gleb P Bourenkov, Karl Levik, Romeu A Pieritz, Alexander N Popov, Olof Svensson.   

Abstract

EDNA is a framework for developing plugin-based applications especially for online data analysis in the X-ray experiments field. This article describes the features provided by the EDNA framework to ease the development of extensible scientific applications. This framework includes a plugins class hierarchy, configuration and application facilities, a mechanism to generate data classes and a testing framework. These utilities allow rapid development and integration in which robustness and quality play a fundamental role. A first prototype, designed for macromolecular crystallography experiments and tested at several synchrotrons, is presented.

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Year:  2009        PMID: 19844027     DOI: 10.1107/S0909049509036681

Source DB:  PubMed          Journal:  J Synchrotron Radiat        ISSN: 0909-0495            Impact factor:   2.616


  93 in total

1.  Measurement of the equilibrium relative humidity for common precipitant concentrations: facilitating controlled dehydration experiments.

Authors:  Matthew J Wheeler; Silvia Russi; Michael G Bowler; Matthew W Bowler
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2011-12-24

2.  Crystallization and preliminary X-ray diffraction of malate dehydrogenase from Plasmodium falciparum.

Authors:  Carsten Wrenger; Ingrid B Müller; Sabine Butzloff; Rositsa Jordanova; Sergey Lunev; Matthew R Groves
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2012-05-23

3.  Overexpression, purification and crystallization of the response regulator NsrR involved in nisin resistance.

Authors:  Sakshi Khosa; Astrid Hoeppner; Diana Kleinschrodt; Sander H J Smits
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2015-09-23       Impact factor: 1.056

4.  Filling the Void: Introducing Aromatic Interactions into Solvent Tunnels To Enhance Lipase Stability in Methanol.

Authors:  Shalev Gihaz; Margarita Kanteev; Yael Pazy; Ayelet Fishman
Journal:  Appl Environ Microbiol       Date:  2018-11-15       Impact factor: 4.792

5.  Overexpression, purification, crystallization and preliminary X-ray diffraction of the nisin resistance protein from Streptococcus agalactiae.

Authors:  Sakshi Khosa; Astrid Hoeppner; Diana Kleinschrodt; Sander H J Smits
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2015-05-20       Impact factor: 1.056

6.  Measurement of the intrinsic variability within protein crystals: implications for sample-evaluation and data-collection strategies.

Authors:  Michael G Bowler; Matthew W Bowler
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2013-12-24       Impact factor: 1.056

7.  Optimization of data collection taking radiation damage into account.

Authors:  Gleb P Bourenkov; Alexander N Popov
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

8.  Autoindexing with outlier rejection and identification of superimposed lattices.

Authors:  Nicholas K Sauter; Billy K Poon
Journal:  J Appl Crystallogr       Date:  2010-04-30       Impact factor: 3.304

9.  Know your dose: RADDOSE.

Authors:  Karthik S Paithankar; Elspeth F Garman
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

10.  Radiation damage in macromolecular crystallography: what is it and why should we care?

Authors:  Elspeth F Garman
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24
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