Literature DB >> 26248267

Toward understanding and exploiting tumor heterogeneity.

Ash A Alizadeh1, Victoria Aranda2, Alberto Bardelli3, Cedric Blanpain4, Christoph Bock5, Christine Borowski2, Carlos Caldas6, Andrea Califano7, Michael Doherty8, Markus Elsner9, Manel Esteller10, Rebecca Fitzgerald11, Jan O Korbel12, Peter Lichter13, Christopher E Mason14, Nicholas Navin15, Dana Pe'er16, Kornelia Polyak17, Charles W M Roberts18, Lillian Siu19, Alexandra Snyder20, Hannah Stower2, Charles Swanton21, Roel G W Verhaak22, Jean C Zenklusen23, Johannes Zuber24, Jessica Zucman-Rossi25.   

Abstract

The extent of tumor heterogeneity is an emerging theme that researchers are only beginning to understand. How genetic and epigenetic heterogeneity affects tumor evolution and clinical progression is unknown. The precise nature of the environmental factors that influence this heterogeneity is also yet to be characterized. Nature Medicine, Nature Biotechnology and the Volkswagen Foundation organized a meeting focused on identifying the obstacles that need to be overcome to advance translational research in and tumor heterogeneity. Once these key questions were established, the attendees devised potential solutions. Their ideas are presented here.

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Year:  2015        PMID: 26248267      PMCID: PMC4785013          DOI: 10.1038/nm.3915

Source DB:  PubMed          Journal:  Nat Med        ISSN: 1078-8956            Impact factor:   53.440


  36 in total

1.  Cancer Core Europe: a consortium to address the cancer care-cancer research continuum challenge.

Authors:  Alexander M M Eggermont; Carlos Caldas; Ulrik Ringborg; René Medema; Josep Tabernero; Otmar Wiestler
Journal:  Eur J Cancer       Date:  2014-09-25       Impact factor: 9.162

2.  Identification of causal genetic drivers of human disease through systems-level analysis of regulatory networks.

Authors:  James C Chen; Mariano J Alvarez; Flaminia Talos; Harshil Dhruv; Gabrielle E Rieckhof; Archana Iyer; Kristin L Diefes; Kenneth Aldape; Michael Berens; Michael M Shen; Andrea Califano
Journal:  Cell       Date:  2014-10-09       Impact factor: 41.582

Review 3.  The pivotal regulatory landscape of RNA modifications.

Authors:  Sheng Li; Christopher E Mason
Journal:  Annu Rev Genomics Hum Genet       Date:  2014-06-02       Impact factor: 8.929

Review 4.  Biological and therapeutic impact of intratumor heterogeneity in cancer evolution.

Authors:  Nicholas McGranahan; Charles Swanton
Journal:  Cancer Cell       Date:  2015-01-12       Impact factor: 31.743

5.  A community computational challenge to predict the activity of pairs of compounds.

Authors:  Mukesh Bansal; Jichen Yang; Charles Karan; Michael P Menden; James C Costello; Hao Tang; Guanghua Xiao; Yajuan Li; Jeffrey Allen; Rui Zhong; Beibei Chen; Minsoo Kim; Tao Wang; Laura M Heiser; Ronald Realubit; Michela Mattioli; Mariano J Alvarez; Yao Shen; Daniel Gallahan; Dinah Singer; Julio Saez-Rodriguez; Yang Xie; Gustavo Stolovitzky; Andrea Califano
Journal:  Nat Biotechnol       Date:  2014-11-17       Impact factor: 54.908

6.  Multiplexed ion beam imaging of human breast tumors.

Authors:  Michael Angelo; Sean C Bendall; Rachel Finck; Matthew B Hale; Chuck Hitzman; Alexander D Borowsky; Richard M Levenson; John B Lowe; Scot D Liu; Shuchun Zhao; Yasodha Natkunam; Garry P Nolan
Journal:  Nat Med       Date:  2014-03-02       Impact factor: 53.440

7.  Highly multiplexed subcellular RNA sequencing in situ.

Authors:  Je Hyuk Lee; Evan R Daugharthy; Jonathan Scheiman; Reza Kalhor; Joyce L Yang; Thomas C Ferrante; Richard Terry; Sauveur S F Jeanty; Chao Li; Ryoji Amamoto; Derek T Peters; Brian M Turczyk; Adam H Marblestone; Samuel A Inverso; Amy Bernard; Prashant Mali; Xavier Rios; John Aach; George M Church
Journal:  Science       Date:  2014-02-27       Impact factor: 47.728

8.  Localized oncolytic virotherapy overcomes systemic tumor resistance to immune checkpoint blockade immunotherapy.

Authors:  Jedd D Wolchok; James P Allison; Dmitriy Zamarin; Rikke B Holmgaard; Sumit K Subudhi; Joon Seok Park; Mena Mansour; Peter Palese; Taha Merghoub
Journal:  Sci Transl Med       Date:  2014-03-05       Impact factor: 17.956

Review 9.  Cisplatin-induced antitumor immunomodulation: a review of preclinical and clinical evidence.

Authors:  Andreas R de Biasi; Jonathan Villena-Vargas; Prasad S Adusumilli
Journal:  Clin Cancer Res       Date:  2014-09-09       Impact factor: 12.531

10.  An ultrasensitive method for quantitating circulating tumor DNA with broad patient coverage.

Authors:  Aaron M Newman; Scott V Bratman; Jacqueline To; Jacob F Wynne; Neville C W Eclov; Leslie A Modlin; Chih Long Liu; Joel W Neal; Heather A Wakelee; Robert E Merritt; Joseph B Shrager; Billy W Loo; Ash A Alizadeh; Maximilian Diehn
Journal:  Nat Med       Date:  2014-04-06       Impact factor: 53.440

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  233 in total

1.  Human AML-iPSCs Reacquire Leukemic Properties after Differentiation and Model Clonal Variation of Disease.

Authors:  Mark P Chao; Andrew J Gentles; Susmita Chatterjee; Feng Lan; Andreas Reinisch; M Ryan Corces; Seethu Xavy; Jinfeng Shen; Daniel Haag; Soham Chanda; Rahul Sinha; Rachel M Morganti; Toshinobu Nishimura; Mohamed Ameen; Haodi Wu; Marius Wernig; Joseph C Wu; Ravindra Majeti
Journal:  Cell Stem Cell       Date:  2017-01-12       Impact factor: 24.633

2.  Targeting the Tumor Core: Hypoxia-Responsive Nanoparticles for the Delivery of Chemotherapy to Pancreatic Tumors.

Authors:  Matthew I Confeld; Babak Mamnoon; Li Feng; Heather Jensen-Smith; Priyanka Ray; James Froberg; Jiha Kim; Michael A Hollingsworth; Mohiuddin Quadir; Yongki Choi; Sanku Mallik
Journal:  Mol Pharm       Date:  2020-07-22       Impact factor: 4.939

Review 3.  Genomic Medicine and Implications for Hepatocellular Carcinoma Prevention and Therapy.

Authors:  Renumathy Dhanasekaran; Jean-Charles Nault; Lewis R Roberts; Jessica Zucman-Rossi
Journal:  Gastroenterology       Date:  2018-11-04       Impact factor: 22.682

Review 4.  Modulating secreted components of tumor microenvironment: A masterstroke in tumor therapeutics.

Authors:  Himadri Patel; Pritish Nilendu; Devashree Jahagirdar; Jayanta K Pal; Nilesh Kumar Sharma
Journal:  Cancer Biol Ther       Date:  2017-12-08       Impact factor: 4.742

5.  Multi-omics analysis of primary glioblastoma cell lines shows recapitulation of pivotal molecular features of parental tumors.

Authors:  Shai Rosenberg; Maïté Verreault; Charlotte Schmitt; Justine Guegan; Jeremy Guehennec; Camille Levasseur; Yannick Marie; Franck Bielle; Karima Mokhtari; Khê Hoang-Xuan; Keith Ligon; Marc Sanson; Jean-Yves Delattre; Ahmed Idbaih
Journal:  Neuro Oncol       Date:  2017-02-01       Impact factor: 12.300

Review 6.  Advancing Cancer Research and Medicine with Single-Cell Genomics.

Authors:  Bora Lim; Yiyun Lin; Nicholas Navin
Journal:  Cancer Cell       Date:  2020-04-13       Impact factor: 31.743

7.  Emerging techniques in single-cell epigenomics and their applications to cancer research.

Authors:  Pang-Kuo Lo; Qun Zhou
Journal:  J Clin Genom       Date:  2018-03-05

8.  Implementation of a Multicenter Biobanking Collaboration for Next-Generation Sequencing-Based Biomarker Discovery Based on Fresh Frozen Pretreatment Tumor Tissue Biopsies.

Authors:  Sander Bins; Geert A Cirkel; Christa G Gadellaa-Van Hooijdonk; Fleur Weeber; Isaac J Numan; Annette H Bruggink; Paul J van Diest; Stefan M Willems; Wouter B Veldhuis; Michel M van den Heuvel; Rob J de Knegt; Marco J Koudijs; Erik van Werkhoven; Ron H J Mathijssen; Edwin Cuppen; Stefan Sleijfer; Jan H M Schellens; Emile E Voest; Marlies H G Langenberg; Maja J A de Jonge; Neeltje Steeghs; Martijn P Lolkema
Journal:  Oncologist       Date:  2016-09-23

Review 9.  Challenges and unanswered questions for the next decade of circulating tumour cell research in lung cancer.

Authors:  Sumitra Mohan; Francesca Chemi; Ged Brady
Journal:  Transl Lung Cancer Res       Date:  2017-08

10.  Chromatin Regulators as a Guide for Cancer Treatment Choice.

Authors:  Zachary A Gurard-Levin; Laurence O W Wilson; Vera Pancaldi; Sophie Postel-Vinay; Fabricio G Sousa; Cecile Reyes; Elisabetta Marangoni; David Gentien; Alfonso Valencia; Yves Pommier; Paul Cottu; Geneviève Almouzni
Journal:  Mol Cancer Ther       Date:  2016-05-16       Impact factor: 6.261

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