Literature DB >> 26244935

Organization of the Mammalian Metabolome according to Organ Function, Lineage Specialization, and Longevity.

Siming Ma1, Sun Hee Yim2, Sang-Goo Lee3, Eun Bae Kim4, Sang-Rae Lee5, Kyu-Tae Chang5, Rochelle Buffenstein6, Kaitlyn N Lewis6, Thomas J Park7, Richard A Miller8, Clary B Clish9, Vadim N Gladyshev10.   

Abstract

Biological diversity among mammals is remarkable. Mammalian body weights range seven orders of magnitude and lifespans differ more than 100-fold among species. While genetic, dietary, and pharmacological interventions can be used to modulate these traits in model organisms, it is unknown how they are determined by natural selection. By profiling metabolites in brain, heart, kidney, and liver tissues of 26 mammalian species representing ten taxonomical orders, we report metabolite patterns characteristic of organs, lineages, and species longevity. Our data suggest different rates of metabolite divergence across organs and reveal patterns representing organ-specific functions and lineage-specific physiologies. We identified metabolites that correlated with species lifespan, some of which were previously implicated in longevity control. We also compared the results with metabolite changes in five long-lived mouse models and observed some similar patterns. Overall, this study describes adjustments of the mammalian metabolome according to lifespan, phylogeny, and organ and lineage specialization.
Copyright © 2015 Elsevier Inc. All rights reserved.

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Year:  2015        PMID: 26244935      PMCID: PMC4758382          DOI: 10.1016/j.cmet.2015.07.005

Source DB:  PubMed          Journal:  Cell Metab        ISSN: 1550-4131            Impact factor:   27.287


  74 in total

Review 1.  Protein oxidation in aging, disease, and oxidative stress.

Authors:  B S Berlett; E R Stadtman
Journal:  J Biol Chem       Date:  1997-08-15       Impact factor: 5.157

2.  Patho-physiologic findings after chronic tryptophan deficiency in rats: a model for delayed growth and aging.

Authors:  P E Segall; P S Timiras
Journal:  Mech Ageing Dev       Date:  1976 Mar-Apr       Impact factor: 5.432

3.  Impacts of the Cretaceous Terrestrial Revolution and KPg extinction on mammal diversification.

Authors:  Robert W Meredith; Jan E Janečka; John Gatesy; Oliver A Ryder; Colleen A Fisher; Emma C Teeling; Alisha Goodbla; Eduardo Eizirik; Taiz L L Simão; Tanja Stadler; Daniel L Rabosky; Rodney L Honeycutt; John J Flynn; Colleen M Ingram; Cynthia Steiner; Tiffani L Williams; Terence J Robinson; Angela Burk-Herrick; Michael Westerman; Nadia A Ayoub; Mark S Springer; William J Murphy
Journal:  Science       Date:  2011-09-22       Impact factor: 47.728

4.  Restriction of amino acids extends lifespan in Drosophila melanogaster.

Authors:  Kyung-Jin Min; Marc Tatar
Journal:  Mech Ageing Dev       Date:  2006-04-17       Impact factor: 5.432

5.  The oxidative stress theory of aging: embattled or invincible? Insights from non-traditional model organisms.

Authors:  Rochelle Buffenstein; Yael H Edrey; Ting Yang; James Mele
Journal:  Age (Dordr)       Date:  2008-06-14

6.  Evaluation of allantoin levels as a new marker of oxidative stress in Behçet's disease.

Authors:  S Yardim-Akaydin; A Sepici; Y Ozkan; B Simşek; V Sepici
Journal:  Scand J Rheumatol       Date:  2006 Jan-Feb       Impact factor: 3.641

7.  The biochemical basis for the conjugation of bile acids with either glycine or taurine.

Authors:  D A Vessey
Journal:  Biochem J       Date:  1978-08-15       Impact factor: 3.857

8.  Methionine restriction extends lifespan of Drosophila melanogaster under conditions of low amino-acid status.

Authors:  Byung Cheon Lee; Alaattin Kaya; Siming Ma; Gwansu Kim; Maxim V Gerashchenko; Sun Hee Yim; Zhen Hu; Lawrence G Harshman; Vadim N Gladyshev
Journal:  Nat Commun       Date:  2014-04-07       Impact factor: 14.919

9.  Amino-acid imbalance explains extension of lifespan by dietary restriction in Drosophila.

Authors:  Richard C Grandison; Matthew D W Piper; Linda Partridge
Journal:  Nature       Date:  2009-12-02       Impact factor: 49.962

10.  A review of the biochemistry, metabolism and clinical benefits of thiamin(e) and its derivatives.

Authors:  Derrick Lonsdale
Journal:  Evid Based Complement Alternat Med       Date:  2006-03       Impact factor: 2.629

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  50 in total

1.  Identification and Application of Gene Expression Signatures Associated with Lifespan Extension.

Authors:  Alexander Tyshkovskiy; Perinur Bozaykut; Anastasia A Borodinova; Maxim V Gerashchenko; Gene P Ables; Michael Garratt; Philipp Khaitovich; Clary B Clish; Richard A Miller; Vadim N Gladyshev
Journal:  Cell Metab       Date:  2019-07-25       Impact factor: 27.287

2.  Illuminating a plant's tissue-specific metabolic diversity using computational metabolomics and information theory.

Authors:  Dapeng Li; Sven Heiling; Ian T Baldwin; Emmanuel Gaquerel
Journal:  Proc Natl Acad Sci U S A       Date:  2016-11-07       Impact factor: 11.205

Review 3.  Molecular signatures of longevity: Insights from cross-species comparative studies.

Authors:  Siming Ma; Vadim N Gladyshev
Journal:  Semin Cell Dev Biol       Date:  2017-08-08       Impact factor: 7.727

Review 4.  Non-enzymatic molecular damage as a prototypic driver of aging.

Authors:  Alexey Golubev; Andrew D Hanson; Vadim N Gladyshev
Journal:  J Biol Chem       Date:  2017-03-06       Impact factor: 5.157

5.  Metabolic Signatures of Life Span Regulated by Mating, Sex Peptide, and Mifepristone/RU486 in Female Drosophila melanogaster.

Authors:  Gary N Landis; Devon V Doherty; Chia-An Yen; Lu Wang; Yang Fan; Ina Wang; Jonah Vroegop; Tianyi Wang; Jimmy Wu; Palak Patel; Shinwoo Lee; Mina Abdelmesieh; Jie Shen; Daniel E L Promislow; Sean P Curran; John Tower
Journal:  J Gerontol A Biol Sci Med Sci       Date:  2021-01-18       Impact factor: 6.053

Review 6.  Linking Lipid Metabolism to Chromatin Regulation in Aging.

Authors:  Katharina Papsdorf; Anne Brunet
Journal:  Trends Cell Biol       Date:  2018-10-10       Impact factor: 20.808

7.  Redox Pioneer: Professor Vadim N. Gladyshev.

Authors:  Dolph L Hatfield
Journal:  Antioxid Redox Signal       Date:  2016-05-24       Impact factor: 8.401

Review 8.  Paradigm shift - Metabolic transformation of docosahexaenoic and eicosapentaenoic acids to bioactives exemplify the promise of fatty acid drug discovery.

Authors:  Ganesh V Halade; Laurence M Black; Mahendra Kumar Verma
Journal:  Biotechnol Adv       Date:  2018-02-28       Impact factor: 14.227

Review 9.  Proteomics of Long-Lived Mammals.

Authors:  Gregory Tombline; Jonathan Gigas; Nicholas Macoretta; Max Zacher; Stephan Emmrich; Yang Zhao; Andrei Seluanov; Vera Gorbunova
Journal:  Proteomics       Date:  2020-01-09       Impact factor: 3.984

Review 10.  Cutting back on the essentials: Can manipulating intake of specific amino acids modulate health and lifespan?

Authors:  Holly M Brown-Borg; Rochelle Buffenstein
Journal:  Ageing Res Rev       Date:  2016-08-26       Impact factor: 10.895

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