Literature DB >> 262439

Diffusion-controlled reactions on spherical surfaces. Application to bacteriophage tail fiber attachment.

V A Bloomfield, S Prager.   

Abstract

We have explored the kinetic implications of a model that may account for the acceleration of tail fiber (F) attachment to baseplates (B) by whiskers (W) on bacteriophage T4. The model assumes that a W-F complex is formed initially, and that the tethered fiber then undergoes rotational diffusion until a B-F encounter takes place. In the absence of whiskers, B-F complexes must form unassisted. Formation of a W-F intermediate will accelerate F attachment to B if (a) the bimolecular rate constant for W-F complex formation is larger than that for direct B-F interaction and (b) subsequent rotational diffusion of the tip of F to B is not much slower than the dissociation of W-F. Condition a was investigated by applying a recent theory of orientational effects on translational diffusion-controlled reactions. This theory suggests that substantial rate enhancement is expected if the reaction half-angle theta 0 is larger for W-F than for B-F complex formation. Condition b was investigated by calculating the mean and the variance of the time required for the diffusion of a molecule (the proximal tip of the fiber) on a spherical surface (whose radius is the distance from the tip to the whisker tethering point) into a circular sink (the baseplate site). The mean time is on the order of the inverse rotational diffusion coefficient, DR, of the fiber, but is sensitive to theta 0. Both conditions are satisfied for plausible choices of parameters. The solution to the diffusion equation we have obtained should have application to other physical situations, such as the rate of quenching of a fluorophore as it diffuses on the surface of a spherical membrane into proximity with a quencher.

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Year:  1979        PMID: 262439      PMCID: PMC1328599          DOI: 10.1016/S0006-3495(79)85228-5

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  10 in total

1.  The determination of local cell membrane diffusion coefficients.

Authors:  T J Lardner; N Solomon
Journal:  J Theor Biol       Date:  1976-08-07       Impact factor: 2.691

2.  Bacteriophage T4 whiskers: a rudimentary environment-sensing device.

Authors:  M P Conley; W B Wood
Journal:  Proc Natl Acad Sci U S A       Date:  1975-09       Impact factor: 11.205

3.  Genetic control of whisker antigen of bacteriophage T4D.

Authors:  M J Dewey; J S Wiberg; F R Frankel
Journal:  J Mol Biol       Date:  1974-04-25       Impact factor: 5.469

4.  Assembly and attachment of bacteriophage T4 tail fibers.

Authors:  R J Bishop; M P Conley; W B Wood
Journal:  J Supramol Struct       Date:  1974

5.  Assembly of the tail of bacteriophage T4.

Authors:  J King
Journal:  J Mol Biol       Date:  1968-03-14       Impact factor: 5.469

6.  Assembly of bacteriophage T4 tail fibers: the sequence of gene product interaction.

Authors:  J King; W B Wood
Journal:  J Mol Biol       Date:  1969-02-14       Impact factor: 5.469

7.  The role of diffusion in bimolecular solution kinetics.

Authors:  J M Schurr
Journal:  Biophys J       Date:  1970-08       Impact factor: 4.033

8.  Structural proteins of bacteriophage T4.

Authors:  R C Dickson; S L Barnes; F A Eiserling
Journal:  J Mol Biol       Date:  1970-11-14       Impact factor: 5.469

9.  Alternative pathways of tail fiber assembly in bacteriophage T4?

Authors:  E Terzaghi
Journal:  J Mol Biol       Date:  1971-07-28       Impact factor: 5.469

10.  Bacteriophage T4 RNA ligase is gene 63 product, the protein that promotes tail fiber attachment to the baseplate.

Authors:  T J Snopek; W B Wood; M P Conley; P Chen; N R Cozzarelli
Journal:  Proc Natl Acad Sci U S A       Date:  1977-08       Impact factor: 11.205

  10 in total
  8 in total

1.  Search for a small hole in a cavity wall by intermittent bulk and surface diffusion.

Authors:  Alexander M Berezhkovskii; Alexander V Barzykin
Journal:  J Chem Phys       Date:  2012-02-07       Impact factor: 3.488

2.  Enhancement of diffusion-controlled reaction rates by surface-induced orientational restriction.

Authors:  Ambarish Nag; Aaron R Dinner
Journal:  Biophys J       Date:  2005-11-18       Impact factor: 4.033

3.  Surface site diffusion and reaction on molecular "organizates" and colloidal catalysts: A geometrical perspective.

Authors:  P A Politowicz; J J Kozak
Journal:  Proc Natl Acad Sci U S A       Date:  1987-12       Impact factor: 11.205

4.  Diffusion and reaction in the cell glycocalyx and the extracellular matrix.

Authors:  Howard A Levine; Maria P McGee; Susana Serna
Journal:  J Math Biol       Date:  2009-03-10       Impact factor: 2.259

5.  Analysis of intracellular receptor/ligand sorting. Calculation of mean surface and bulk diffusion times within a sphere.

Authors:  J J Linderman; D A Lauffenburger
Journal:  Biophys J       Date:  1986-08       Impact factor: 4.033

6.  Orientation constraints in diffusion-limited macromolecular association. The role of surface diffusion as a rate-enhancing mechanism.

Authors:  O G Berg
Journal:  Biophys J       Date:  1985-01       Impact factor: 4.033

7.  Surface-facilitated trapping by active sites: From catalysts to viruses.

Authors:  Mikita M Misiura; Alexander M Berezhkovskii; Sergey M Bezrukov; Anatoly B Kolomeisky
Journal:  J Chem Phys       Date:  2021-11-14       Impact factor: 3.488

8.  URDME: a modular framework for stochastic simulation of reaction-transport processes in complex geometries.

Authors:  Brian Drawert; Stefan Engblom; Andreas Hellander
Journal:  BMC Syst Biol       Date:  2012-06-22
  8 in total

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