Literature DB >> 26221022

Phytoplankton-bacterial interactions mediate micronutrient colimitation at the coastal Antarctic sea ice edge.

Erin M Bertrand1, John P McCrow2, Ahmed Moustafa3, Hong Zheng2, Jeffrey B McQuaid1, Tom O Delmont4, Anton F Post5, Rachel E Sipler6, Jenna L Spackeen6, Kai Xu7, Deborah A Bronk6, David A Hutchins7, Andrew E Allen8.   

Abstract

Southern Ocean primary productivity plays a key role in global ocean biogeochemistry and climate. At the Southern Ocean sea ice edge in coastal McMurdo Sound, we observed simultaneous cobalamin and iron limitation of surface water phytoplankton communities in late Austral summer. Cobalamin is produced only by bacteria and archaea, suggesting phytoplankton-bacterial interactions must play a role in this limitation. To characterize these interactions and investigate the molecular basis of multiple nutrient limitation, we examined transitions in global gene expression over short time scales, induced by shifts in micronutrient availability. Diatoms, the dominant primary producers, exhibited transcriptional patterns indicative of co-occurring iron and cobalamin deprivation. The major contributor to cobalamin biosynthesis gene expression was a gammaproteobacterial population, Oceanospirillaceae ASP10-02a. This group also contributed significantly to metagenomic cobalamin biosynthesis gene abundance throughout Southern Ocean surface waters. Oceanospirillaceae ASP10-02a displayed elevated expression of organic matter acquisition and cell surface attachment-related genes, consistent with a mutualistic relationship in which they are dependent on phytoplankton growth to fuel cobalamin production. Separate bacterial groups, including Methylophaga, appeared to rely on phytoplankton for carbon and energy sources, but displayed gene expression patterns consistent with iron and cobalamin deprivation. This suggests they also compete with phytoplankton and are important cobalamin consumers. Expression patterns of siderophore- related genes offer evidence for bacterial influences on iron availability as well. The nature and degree of this episodic colimitation appear to be mediated by a series of phytoplankton-bacterial interactions in both positive and negative feedback loops.

Entities:  

Keywords:  Southern Ocean primary productivity; cobalamin; colimitation; metatranscriptomics; phytoplankton–bacterial interactions

Mesh:

Substances:

Year:  2015        PMID: 26221022      PMCID: PMC4538660          DOI: 10.1073/pnas.1501615112

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  24 in total

1.  Oxidation of dimethylsulfide to tetrathionate by Methylophaga thiooxidans sp. nov.: a new link in the sulfur cycle.

Authors:  Rich Boden; Donovan P Kelly; J Colin Murrell; Hendrik Schäfer
Journal:  Environ Microbiol       Date:  2010-10       Impact factor: 5.491

2.  Algae acquire vitamin B12 through a symbiotic relationship with bacteria.

Authors:  Martin T Croft; Andrew D Lawrence; Evelyne Raux-Deery; Martin J Warren; Alison G Smith
Journal:  Nature       Date:  2005-11-03       Impact factor: 49.962

3.  Methylophaga aminisulfidivorans sp. nov., a restricted facultatively methylotrophic marine bacterium.

Authors:  Hee Gon Kim; Nina V Doronina; Yuri A Trotsenko; Si Wouk Kim
Journal:  Int J Syst Evol Microbiol       Date:  2007-09       Impact factor: 2.747

4.  Comparative genomics of the vitamin B12 metabolism and regulation in prokaryotes.

Authors:  Dmitry A Rodionov; Alexey G Vitreschak; Andrey A Mironov; Mikhail S Gelfand
Journal:  J Biol Chem       Date:  2003-07-17       Impact factor: 5.157

5.  HecA, a member of a class of adhesins produced by diverse pathogenic bacteria, contributes to the attachment, aggregation, epidermal cell killing, and virulence phenotypes of Erwinia chrysanthemi EC16 on Nicotiana clevelandii seedlings.

Authors:  Clemencia M Rojas; Jong Hyun Ham; Wen-Ling Deng; Jeff J Doyle; Alan Collmer
Journal:  Proc Natl Acad Sci U S A       Date:  2002-09-23       Impact factor: 11.205

6.  Whole-cell response of the pennate diatom Phaeodactylum tricornutum to iron starvation.

Authors:  Andrew E Allen; Julie Laroche; Uma Maheswari; Markus Lommer; Nicolas Schauer; Pascal J Lopez; Giovanni Finazzi; Alisdair R Fernie; Chris Bowler
Journal:  Proc Natl Acad Sci U S A       Date:  2008-07-24       Impact factor: 11.205

7.  A metagenomic assessment of winter and summer bacterioplankton from Antarctica Peninsula coastal surface waters.

Authors:  Joseph J Grzymski; Christian S Riesenfeld; Timothy J Williams; Alex M Dussaq; Hugh Ducklow; Matthew Erickson; Ricardo Cavicchioli; Alison E Murray
Journal:  ISME J       Date:  2012-04-26       Impact factor: 10.302

8.  FragGeneScan: predicting genes in short and error-prone reads.

Authors:  Mina Rho; Haixu Tang; Yuzhen Ye
Journal:  Nucleic Acids Res       Date:  2010-08-30       Impact factor: 16.971

9.  Iron limitation of a springtime bacterial and phytoplankton community in the ross sea: implications for vitamin b(12) nutrition.

Authors:  Erin M Bertrand; Mak A Saito; Peter A Lee; Robert B Dunbar; Peter N Sedwick; Giacomo R Ditullio
Journal:  Front Microbiol       Date:  2011-08-15       Impact factor: 5.640

10.  edgeR: a Bioconductor package for differential expression analysis of digital gene expression data.

Authors:  Mark D Robinson; Davis J McCarthy; Gordon K Smyth
Journal:  Bioinformatics       Date:  2009-11-11       Impact factor: 6.937

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  53 in total

1.  Different iron storage strategies among bloom-forming diatoms.

Authors:  Robert H Lampe; Elizabeth L Mann; Natalie R Cohen; Claire P Till; Kimberlee Thamatrakoln; Mark A Brzezinski; Kenneth W Bruland; Benjamin S Twining; Adrian Marchetti
Journal:  Proc Natl Acad Sci U S A       Date:  2018-12-11       Impact factor: 11.205

Review 2.  Probing the evolution, ecology and physiology of marine protists using transcriptomics.

Authors:  David A Caron; Harriet Alexander; Andrew E Allen; John M Archibald; E Virginia Armbrust; Charles Bachy; Callum J Bell; Arvind Bharti; Sonya T Dyhrman; Stephanie M Guida; Karla B Heidelberg; Jonathan Z Kaye; Julia Metzner; Sarah R Smith; Alexandra Z Worden
Journal:  Nat Rev Microbiol       Date:  2016-11-21       Impact factor: 60.633

3.  The Trichodesmium consortium: conserved heterotrophic co-occurrence and genomic signatures of potential interactions.

Authors:  Michael D Lee; Nathan G Walworth; Erin L McParland; Fei-Xue Fu; Tracy J Mincer; Naomi M Levine; David A Hutchins; Eric A Webb
Journal:  ISME J       Date:  2017-04-25       Impact factor: 10.302

4.  Local interactions and self-organized spatial patterns stabilize microbial cross-feeding against cheaters.

Authors:  Simon Maccracken Stump; Evan Curtis Johnson; Christopher A Klausmeier
Journal:  J R Soc Interface       Date:  2018-03       Impact factor: 4.118

Review 5.  Vitamin B12 sources and microbial interaction.

Authors:  Fumio Watanabe; Tomohiro Bito
Journal:  Exp Biol Med (Maywood)       Date:  2017-12-07

6.  Coordinated gene expression between Trichodesmium and its microbiome over day-night cycles in the North Pacific Subtropical Gyre.

Authors:  Kyle R Frischkorn; Sheean T Haley; Sonya T Dyhrman
Journal:  ISME J       Date:  2018-01-30       Impact factor: 10.302

Review 7.  Diatom Molecular Research Comes of Age: Model Species for Studying Phytoplankton Biology and Diversity.

Authors:  Angela Falciatore; Marianne Jaubert; Jean-Pierre Bouly; Benjamin Bailleul; Thomas Mock
Journal:  Plant Cell       Date:  2019-12-18       Impact factor: 11.277

8.  An Amoebal Grazer of Cyanobacteria Requires Cobalamin Produced by Heterotrophic Bacteria.

Authors:  Amy T Ma; Joris Beld; Bianca Brahamsha
Journal:  Appl Environ Microbiol       Date:  2017-05-01       Impact factor: 4.792

9.  Carbonate-sensitive phytotransferrin controls high-affinity iron uptake in diatoms.

Authors:  Jeffrey B McQuaid; Adam B Kustka; Miroslav Oborník; Aleš Horák; John P McCrow; Bogumil J Karas; Hong Zheng; Theodor Kindeberg; Andreas J Andersson; Katherine A Barbeau; Andrew E Allen
Journal:  Nature       Date:  2018-03-14       Impact factor: 49.962

10.  Torn apart and reunited: impact of a heterotroph on the transcriptome of Prochlorococcus.

Authors:  Steven J Biller; Allison Coe; Sallie W Chisholm
Journal:  ISME J       Date:  2016-06-03       Impact factor: 10.302

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