Literature DB >> 31852772

Diatom Molecular Research Comes of Age: Model Species for Studying Phytoplankton Biology and Diversity.

Angela Falciatore1,2, Marianne Jaubert3,2, Jean-Pierre Bouly3,2, Benjamin Bailleul3, Thomas Mock4.   

Abstract

Diatoms are the world's most diverse group of algae, comprising at least 100,000 species. Contributing ∼20% of annual global carbon fixation, they underpin major aquatic food webs and drive global biogeochemical cycles. Over the past two decades, Thalassiosira pseudonana and Phaeodactylum tricornutum have become the most important model systems for diatom molecular research, ranging from cell biology to ecophysiology, due to their rapid growth rates, small genomes, and the cumulative wealth of associated genetic resources. To explore the evolutionary divergence of diatoms, additional model species are emerging, such as Fragilariopsis cylindrus and Pseudo-nitzschia multistriata Here, we describe how functional genomics and reverse genetics have contributed to our understanding of this important class of microalgae in the context of evolution, cell biology, and metabolic adaptations. Our review will also highlight promising areas of investigation into the diversity of these photosynthetic organisms, including the discovery of new molecular pathways governing the life of secondary plastid-bearing organisms in aquatic environments.
© 2020 American Society of Plant Biologists. All rights reserved.

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Year:  2019        PMID: 31852772      PMCID: PMC7054031          DOI: 10.1105/tpc.19.00158

Source DB:  PubMed          Journal:  Plant Cell        ISSN: 1040-4651            Impact factor:   11.277


  255 in total

1.  Redox regulation of carbonic anhydrases via thioredoxin in chloroplast of the marine diatom Phaeodactylum tricornutum.

Authors:  Sae Kikutani; Rie Tanaka; Yukiko Yamazaki; Satoshi Hara; Toru Hisabori; Peter G Kroth; Yusuke Matsuda
Journal:  J Biol Chem       Date:  2012-04-25       Impact factor: 5.157

2.  Evolution of the diatoms (Bacillariophyta). IV. A reconstruction of their age from small subunit rRNA coding regions and the fossil record.

Authors:  W H Kooistra; L K Medlin
Journal:  Mol Phylogenet Evol       Date:  1996-12       Impact factor: 4.286

3.  Interaction and signalling between a cosmopolitan phytoplankton and associated bacteria.

Authors:  S A Amin; L R Hmelo; H M van Tol; B P Durham; L T Carlson; K R Heal; R L Morales; C T Berthiaume; M S Parker; B Djunaedi; A E Ingalls; M R Parsek; M A Moran; E V Armbrust
Journal:  Nature       Date:  2015-05-27       Impact factor: 49.962

4.  Nitric oxide-triggered remodeling of chloroplast bioenergetics and thylakoid proteins upon nitrogen starvation in Chlamydomonas reinhardtii.

Authors:  Lili Wei; Benoit Derrien; Arnaud Gautier; Laura Houille-Vernes; Alix Boulouis; Denis Saint-Marcoux; Alizée Malnoë; Fabrice Rappaport; Catherine de Vitry; Olivier Vallon; Yves Choquet; Francis-André Wollman
Journal:  Plant Cell       Date:  2014-01-28       Impact factor: 11.277

5.  Analysis of the genome sequence of the flowering plant Arabidopsis thaliana.

Authors: 
Journal:  Nature       Date:  2000-12-14       Impact factor: 49.962

6.  Energetic coupling between plastids and mitochondria drives CO2 assimilation in diatoms.

Authors:  Benjamin Bailleul; Nicolas Berne; Omer Murik; Dimitris Petroutsos; Judit Prihoda; Atsuko Tanaka; Valeria Villanova; Richard Bligny; Serena Flori; Denis Falconet; Anja Krieger-Liszkay; Stefano Santabarbara; Fabrice Rappaport; Pierre Joliot; Leila Tirichine; Paul G Falkowski; Pierre Cardol; Chris Bowler; Giovanni Finazzi
Journal:  Nature       Date:  2015-07-13       Impact factor: 49.962

7.  In diatoms, a transthylakoid proton gradient alone is not sufficient to induce a non-photochemical fluorescence quenching.

Authors:  J Lavaud; B Rousseau; A-L Etienne
Journal:  FEBS Lett       Date:  2002-07-17       Impact factor: 4.124

8.  Genome and methylome of the oleaginous diatom Cyclotella cryptica reveal genetic flexibility toward a high lipid phenotype.

Authors:  Jesse C Traller; Shawn J Cokus; David A Lopez; Olga Gaidarenko; Sarah R Smith; John P McCrow; Sean D Gallaher; Sheila Podell; Michael Thompson; Orna Cook; Marco Morselli; Artur Jaroszewicz; Eric E Allen; Andrew E Allen; Sabeeha S Merchant; Matteo Pellegrini; Mark Hildebrand
Journal:  Biotechnol Biofuels       Date:  2016-11-25       Impact factor: 6.040

9.  Development of a silicon limitation inducible expression system for recombinant protein production in the centric diatoms Thalassiosira pseudonana and Cyclotella cryptica.

Authors:  Roshan P Shrestha; Mark Hildebrand
Journal:  Microb Cell Fact       Date:  2017-08-17       Impact factor: 5.328

10.  The biomass distribution on Earth.

Authors:  Yinon M Bar-On; Rob Phillips; Ron Milo
Journal:  Proc Natl Acad Sci U S A       Date:  2018-05-21       Impact factor: 11.205

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  20 in total

1.  Biochemical and molecular properties of LHCX1, the essential regulator of dynamic photoprotection in diatoms.

Authors:  Vasco Giovagnetti; Marianne Jaubert; Mahendra K Shukla; Petra Ungerer; Jean-Pierre Bouly; Angela Falciatore; Alexander V Ruban
Journal:  Plant Physiol       Date:  2022-01-20       Impact factor: 8.005

2.  Proximity proteomics in a marine diatom reveals a putative cell surface-to-chloroplast iron trafficking pathway.

Authors:  Jernej Turnšek; John K Brunson; Maria Del Pilar Martinez Viedma; Thomas J Deerinck; Aleš Horák; Miroslav Oborník; Vincent A Bielinski; Andrew Ellis Allen
Journal:  Elife       Date:  2021-02-16       Impact factor: 8.140

3.  Re-examination of two diatom reference genomes using long-read sequencing.

Authors:  Gina V Filloramo; Bruce A Curtis; Emma Blanche; John M Archibald
Journal:  BMC Genomics       Date:  2021-05-24       Impact factor: 3.969

4.  Genome-wide analysis of allele-specific expression of genes in the model diatom Phaeodactylum tricornutum.

Authors:  Antoine Hoguin; Achal Rastogi; Chris Bowler; Leila Tirichine
Journal:  Sci Rep       Date:  2021-02-03       Impact factor: 4.379

5.  Rapid Sorting of Fucoxanthin-Producing Phaeodactylum tricornutum Mutants by Flow Cytometry.

Authors:  Yong Fan; Xiao-Ting Ding; Li-Juan Wang; Er-Ying Jiang; Phung Nghi Van; Fu-Li Li
Journal:  Mar Drugs       Date:  2021-04-17       Impact factor: 5.118

6.  Transcriptomics and Metabolomics Analyses Provide Novel Insights into Glucose-Induced Trophic Transition of the Marine Diatom Nitzschia laevis.

Authors:  Xuemei Mao; Mengdie Ge; Xia Wang; Jianfeng Yu; Xiaojie Li; Bin Liu; Feng Chen
Journal:  Mar Drugs       Date:  2021-07-27       Impact factor: 5.118

Review 7.  An Insight into the Algal Evolution and Genomics.

Authors:  Amna Komal Khan; Humera Kausar; Syyada Samra Jaferi; Samantha Drouet; Christophe Hano; Bilal Haider Abbasi; Sumaira Anjum
Journal:  Biomolecules       Date:  2020-11-06

Review 8.  The Toxic Effects of Antibiotics on Freshwater and Marine Photosynthetic Microorganisms: State of the Art.

Authors:  Lilianna Sharma; Grzegorz Siedlewicz; Ksenia Pazdro
Journal:  Plants (Basel)       Date:  2021-03-21

9.  Diploid genomic architecture of Nitzschia inconspicua, an elite biomass production diatom.

Authors:  Aaron Oliver; Sheila Podell; Agnieszka Pinowska; Jesse C Traller; Sarah R Smith; Ryan McClure; Alex Beliaev; Pavlo Bohutskyi; Eric A Hill; Ariel Rabines; Hong Zheng; Lisa Zeigler Allen; Alan Kuo; Igor V Grigoriev; Andrew E Allen; David Hazlebeck; Eric E Allen
Journal:  Sci Rep       Date:  2021-08-02       Impact factor: 4.379

10.  Multiplexed Genome Editing via an RNA Polymerase II Promoter-Driven sgRNA Array in the Diatom Phaeodactylum tricornutum: Insights Into the Role of StLDP.

Authors:  Yogesh Taparia; Achintya Kumar Dolui; Sammy Boussiba; Inna Khozin-Goldberg
Journal:  Front Plant Sci       Date:  2022-01-04       Impact factor: 5.753

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