Literature DB >> 26220823

Matching two independent cohorts validates DPH1 as a gene responsible for autosomal recessive intellectual disability with short stature, craniofacial, and ectodermal anomalies.

Catrina M Loucks1, Jillian S Parboosingh1,2, Ranad Shaheen3, Francois P Bernier1,2, D Ross McLeod1, Mohammed Z Seidahmed4, Erik G Puffenberger5, Carole Ober6, Robert A Hegele7, Kym M Boycott8, Fowzan S Alkuraya3,9,10, A Micheil Innes1,2.   

Abstract

Recently, Alazami et al. (2015) identified 33 putative candidate disease genes for neurogenetic disorders. One such gene was DPH1, in which a homozygous missense mutation was associated with a 3C syndrome-like phenotype in four patients from a single extended family. Here, we report a second homozygous missense variant in DPH1, seen in four members of a founder population, and associated with a phenotype initially reminiscent of Sensenbrenner syndrome. This postpublication "match" validates DPH1 as a gene underlying syndromic intellectual disability with short stature and craniofacial and ectodermal anomalies, reminiscent of, but distinct from, 3C and Sensenbrenner syndromes. This validation took several years after the independent discoveries due to the absence of effective methods for sharing both candidate phenotype and genotype data between investigators. Sharing of data via Web-based anonymous data exchange servers will play an increasingly important role toward more efficient identification of the molecular basis for rare Mendelian disorders.
© 2015 WILEY PERIODICALS, INC.

Entities:  

Keywords:  DPH1; Matchmaker Exchange; Sensenbrenner; intellectual disability; rare disorders

Mesh:

Substances:

Year:  2015        PMID: 26220823      PMCID: PMC4575268          DOI: 10.1002/humu.22843

Source DB:  PubMed          Journal:  Hum Mutat        ISSN: 1059-7794            Impact factor:   4.878


  15 in total

1.  Translation elongation factor 2 anticodon mimicry domain mutants affect fidelity and diphtheria toxin resistance.

Authors:  Pedro A Ortiz; Rory Ulloque; George K Kihara; Haiyan Zheng; Terri Goss Kinzy
Journal:  J Biol Chem       Date:  2006-09-01       Impact factor: 5.157

2.  Ritscher-Schinzel (cranio-cerebello-cardiac, 3C) syndrome: report of four new cases with renal involvement.

Authors:  Mohammed Zein Seidahmed; Fowzan S Alkuraya; Meeralebbae Shaheed; Mohammed Al Zahrani; Waleed Al Manea; Fayzeh Mansour; Tareq Mustafa; Gehan Farid; Mustafa A Salih
Journal:  Am J Med Genet A       Date:  2011-05-12       Impact factor: 2.802

3.  Accelerating novel candidate gene discovery in neurogenetic disorders via whole-exome sequencing of prescreened multiplex consanguineous families.

Authors:  Anas M Alazami; Nisha Patel; Hanan E Shamseldin; Shamsa Anazi; Mohammed S Al-Dosari; Fatema Alzahrani; Hadia Hijazi; Muneera Alshammari; Mohammed A Aldahmesh; Mustafa A Salih; Eissa Faqeih; Amal Alhashem; Fahad A Bashiri; Mohammed Al-Owain; Amal Y Kentab; Sameera Sogaty; Saeed Al Tala; Mohamad-Hani Temsah; Maha Tulbah; Rasha F Aljelaify; Saad A Alshahwan; Mohammed Zain Seidahmed; Adnan A Alhadid; Hesham Aldhalaan; Fatema AlQallaf; Wesam Kurdi; Majid Alfadhel; Zainab Babay; Mohammad Alsogheer; Namik Kaya; Zuhair N Al-Hassnan; Ghada M H Abdel-Salam; Nouriya Al-Sannaa; Fuad Al Mutairi; Heba Y El Khashab; Saeed Bohlega; Xiaofei Jia; Henry C Nguyen; Rakad Hammami; Nouran Adly; Jawahir Y Mohamed; Firdous Abdulwahab; Niema Ibrahim; Ewa A Naim; Banan Al-Younes; Brian F Meyer; Mais Hashem; Ranad Shaheen; Yong Xiong; Mohamed Abouelhoda; Abdulrahman A Aldeeri; Dorota M Monies; Fowzan S Alkuraya
Journal:  Cell Rep       Date:  2014-12-31       Impact factor: 9.423

4.  GeneYenta: a phenotype-based rare disease case matching tool based on online dating algorithms for the acceleration of exome interpretation.

Authors:  Michael M Gottlieb; David J Arenillas; Savanie Maithripala; Zachary D Maurer; Maja Tarailo Graovac; Linlea Armstrong; Millan Patel; Clara van Karnebeek; Wyeth W Wasserman
Journal:  Hum Mutat       Date:  2015-03-19       Impact factor: 4.878

5.  ADP-ribosylation of elongation factor 2 by diphtheria toxin. Isolation and properties of the novel ribosyl-amino acid and its hydrolysis products.

Authors:  B G Van Ness; J B Howard; J W Bodley
Journal:  J Biol Chem       Date:  1980-11-25       Impact factor: 5.157

6.  Role of OVCA1/DPH1 in craniofacial abnormalities of Miller-Dieker syndrome.

Authors:  Yi-Ru Yu; Li-Ru You; Yu-Ting Yan; Chun-Ming Chen
Journal:  Hum Mol Genet       Date:  2014-06-03       Impact factor: 6.150

7.  Diphthamide modification on eukaryotic elongation factor 2 is needed to assure fidelity of mRNA translation and mouse development.

Authors:  Shihui Liu; Christopher Bachran; Pradeep Gupta; Sharmina Miller-Randolph; Hailun Wang; Devorah Crown; Yi Zhang; Alexander N Wein; Rajat Singh; Rasem Fattah; Stephen H Leppla
Journal:  Proc Natl Acad Sci U S A       Date:  2012-08-06       Impact factor: 11.205

8.  Allelic deletion on chromosome 17p13.3 in early ovarian cancer.

Authors:  N J Phillips; M R Ziegler; D M Radford; K L Fair; T Steinbrueck; F P Xynos; H Donis-Keller
Journal:  Cancer Res       Date:  1996-02-01       Impact factor: 12.701

9.  Ovca1 regulates cell proliferation, embryonic development, and tumorigenesis.

Authors:  Chun-Ming Chen; Richard R Behringer
Journal:  Genes Dev       Date:  2004-01-26       Impact factor: 11.361

10.  Genetic mapping and exome sequencing identify variants associated with five novel diseases.

Authors:  Erik G Puffenberger; Robert N Jinks; Carrie Sougnez; Kristian Cibulskis; Rebecca A Willert; Nathan P Achilly; Ryan P Cassidy; Christopher J Fiorentini; Kory F Heiken; Johnny J Lawrence; Molly H Mahoney; Christopher J Miller; Devika T Nair; Kristin A Politi; Kimberly N Worcester; Roni A Setton; Rosa Dipiazza; Eric A Sherman; James T Eastman; Christopher Francklyn; Susan Robey-Bond; Nicholas L Rider; Stacey Gabriel; D Holmes Morton; Kevin A Strauss
Journal:  PLoS One       Date:  2012-01-17       Impact factor: 3.240

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  16 in total

1.  The Matchmaker Exchange: a platform for rare disease gene discovery.

Authors:  Anthony A Philippakis; Danielle R Azzariti; Sergi Beltran; Anthony J Brookes; Catherine A Brownstein; Michael Brudno; Han G Brunner; Orion J Buske; Knox Carey; Cassie Doll; Sergiu Dumitriu; Stephanie O M Dyke; Johan T den Dunnen; Helen V Firth; Richard A Gibbs; Marta Girdea; Michael Gonzalez; Melissa A Haendel; Ada Hamosh; Ingrid A Holm; Lijia Huang; Matthew E Hurles; Ben Hutton; Joel B Krier; Andriy Misyura; Christopher J Mungall; Justin Paschall; Benedict Paten; Peter N Robinson; François Schiettecatte; Nara L Sobreira; Ganesh J Swaminathan; Peter E Taschner; Sharon F Terry; Nicole L Washington; Stephan Züchner; Kym M Boycott; Heidi L Rehm
Journal:  Hum Mutat       Date:  2015-10       Impact factor: 4.878

2.  "Matching" consent to purpose: The example of the Matchmaker Exchange.

Authors:  Stephanie O M Dyke; Bartha M Knoppers; Ada Hamosh; Helen V Firth; Matthew Hurles; Michael Brudno; Kym M Boycott; Anthony A Philippakis; Heidi L Rehm
Journal:  Hum Mutat       Date:  2017-07-12       Impact factor: 4.878

3.  DPH1 syndrome: two novel variants and structural and functional analyses of seven missense variants identified in syndromic patients.

Authors:  Roser Urreizti; Klaus Mayer; Gilad D Evrony; Ulrich Brinkmann; Bryn D Webb; Susanna Balcells; Edith Said; Laura Castilla-Vallmanya; Neal A L Cody; Guillem Plasencia; Bruce D Gelb; Daniel Grinberg
Journal:  Eur J Hum Genet       Date:  2019-03-15       Impact factor: 4.246

4.  Seven years since the launch of the Matchmaker Exchange: The evolution of genomic matchmaking.

Authors:  Kym M Boycott; Danielle R Azzariti; Ada Hamosh; Heidi L Rehm
Journal:  Hum Mutat       Date:  2022-05-10       Impact factor: 4.700

5.  A novel DPH5-related diphthamide-deficiency syndrome causing embryonic lethality or profound neurodevelopmental disorder.

Authors:  Suma P Shankar; Kristin Grimsrud; Louise Lanoue; Alena Egense; Brandon Willis; Johanna Hörberg; Lama AlAbdi; Klaus Mayer; Koray Ütkür; Kristin G Monaghan; Joel Krier; Joan Stoler; Maha Alnemer; Prabhu R Shankar; Raffael Schaffrath; Fowzan S Alkuraya; Ulrich Brinkmann; Leif A Eriksson; Kent Lloyd; Katherine A Rauen
Journal:  Genet Med       Date:  2022-04-28       Impact factor: 8.864

Review 6.  mRNA Translation Gone Awry: Translation Fidelity and Neurological Disease.

Authors:  Mridu Kapur; Susan L Ackerman
Journal:  Trends Genet       Date:  2018-01-16       Impact factor: 11.639

Review 7.  Novel compound heterozygous DPH1 mutations in a patient with the unique clinical features of airway obstruction and external genital abnormalities.

Authors:  Junya Nakajima; Shingo Oana; Tomohiro Sakaguchi; Mitsuko Nakashima; Hironao Numabe; Hisashi Kawashima; Naomichi Matsumoto; Noriko Miyake
Journal:  J Hum Genet       Date:  2018-01-23       Impact factor: 3.172

8.  De Novo variants in EEF2 cause a neurodevelopmental disorder with benign external hydrocephalus.

Authors:  Maria J Nabais Sá; Alexandra N Olson; Grace Yoon; Graeme A M Nimmo; Christopher M Gomez; Michèl A Willemsen; Francisca Millan; Alexandra Schneider; Rolph Pfundt; Arjan P M de Brouwer; Jonathan D Dinman; Bert B A de Vries
Journal:  Hum Mol Genet       Date:  2021-02-25       Impact factor: 6.150

9.  Development of a diagnostic DNA chip to screen for 30 autosomal recessive disorders in the Hutterite population.

Authors:  Barbara Triggs-Raine; Tamara Dyck; Kym M Boycott; A Micheil Innes; Carole Ober; Jillian S Parboosingh; Alexis Botkin; Cheryl R Greenberg; Elizabeth L Spriggs
Journal:  Mol Genet Genomic Med       Date:  2016-01-19       Impact factor: 2.183

10.  A novel homozygous DPH1 mutation causes intellectual disability and unique craniofacial features.

Authors:  Futoshi Sekiguchi; Jafar Nasiri; Maryam Sedghi; Mansoor Salehi; Majid Hosseinzadeh; Nobuhiko Okamoto; Takeshi Mizuguchi; Mitsuko Nakashima; Satoko Miyatake; Atsushi Takata; Noriko Miyake; Naomichi Matsumoto
Journal:  J Hum Genet       Date:  2018-02-06       Impact factor: 3.172

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