Literature DB >> 29362492

Novel compound heterozygous DPH1 mutations in a patient with the unique clinical features of airway obstruction and external genital abnormalities.

Junya Nakajima1, Shingo Oana1, Tomohiro Sakaguchi2, Mitsuko Nakashima2, Hironao Numabe1, Hisashi Kawashima1, Naomichi Matsumoto2, Noriko Miyake3.   

Abstract

The diphthamide biosynthesis 1 (DPH1) gene encodes one of the essential components of the enzyme catalyzing the first step of diphthamide formation on eukaryotic elongation factor 2 (EEF2). Diphthamide is the posttranslationally modified histidine residue on EEF2 that promotes protein chain elongation in the ribosome. DPH1 defects result in a failure of protein synthesis involving EEF2, leading to growth defects, embryonic lethality, and cell death. In humans, DPH1 mutations cause developmental delay with a short stature, dysmorphic features, and sparse hair, and are inherited in an autosomal recessive manner (MIM#616901). To date, only two homozygous missense mutations in DPH1 (c.17T>A, p.Met6Lys and c.701T>C, p.Leu234Pro) have been reported. We used WES to identify novel compound heterozygous mutations in DPH1 (c.289delG, p.Glu97Lysfs*8 and c.491T>C, p.Leu164Pro) in a patient from a nonconsanguineous family presenting with intellectual disability, a short stature, craniofacial abnormalities, and external genital abnormalities. The clinical phenotype of all patients with DPH1 mutations, including the current patient, revealed core features, although the external genital anomaly was newly recognized in our case.

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Year:  2018        PMID: 29362492     DOI: 10.1038/s10038-017-0399-2

Source DB:  PubMed          Journal:  J Hum Genet        ISSN: 1434-5161            Impact factor:   3.172


  12 in total

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Journal:  Genome Res       Date:  2001-05       Impact factor: 9.043

2.  Accelerating novel candidate gene discovery in neurogenetic disorders via whole-exome sequencing of prescreened multiplex consanguineous families.

Authors:  Anas M Alazami; Nisha Patel; Hanan E Shamseldin; Shamsa Anazi; Mohammed S Al-Dosari; Fatema Alzahrani; Hadia Hijazi; Muneera Alshammari; Mohammed A Aldahmesh; Mustafa A Salih; Eissa Faqeih; Amal Alhashem; Fahad A Bashiri; Mohammed Al-Owain; Amal Y Kentab; Sameera Sogaty; Saeed Al Tala; Mohamad-Hani Temsah; Maha Tulbah; Rasha F Aljelaify; Saad A Alshahwan; Mohammed Zain Seidahmed; Adnan A Alhadid; Hesham Aldhalaan; Fatema AlQallaf; Wesam Kurdi; Majid Alfadhel; Zainab Babay; Mohammad Alsogheer; Namik Kaya; Zuhair N Al-Hassnan; Ghada M H Abdel-Salam; Nouriya Al-Sannaa; Fuad Al Mutairi; Heba Y El Khashab; Saeed Bohlega; Xiaofei Jia; Henry C Nguyen; Rakad Hammami; Nouran Adly; Jawahir Y Mohamed; Firdous Abdulwahab; Niema Ibrahim; Ewa A Naim; Banan Al-Younes; Brian F Meyer; Mais Hashem; Ranad Shaheen; Yong Xiong; Mohamed Abouelhoda; Abdulrahman A Aldeeri; Dorota M Monies; Fowzan S Alkuraya
Journal:  Cell Rep       Date:  2014-12-31       Impact factor: 9.423

3.  Identification of the proteins required for biosynthesis of diphthamide, the target of bacterial ADP-ribosylating toxins on translation elongation factor 2.

Authors:  Shihui Liu; G Todd Milne; Jeffrey G Kuremsky; Gerald R Fink; Stephen H Leppla
Journal:  Mol Cell Biol       Date:  2004-11       Impact factor: 4.272

4.  A method and server for predicting damaging missense mutations.

Authors:  Ivan A Adzhubei; Steffen Schmidt; Leonid Peshkin; Vasily E Ramensky; Anna Gerasimova; Peer Bork; Alexey S Kondrashov; Shamil R Sunyaev
Journal:  Nat Methods       Date:  2010-04       Impact factor: 28.547

5.  Matching two independent cohorts validates DPH1 as a gene responsible for autosomal recessive intellectual disability with short stature, craniofacial, and ectodermal anomalies.

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Journal:  Hum Mutat       Date:  2015-08-17       Impact factor: 4.878

6.  Diphthamide modification on eukaryotic elongation factor 2 is needed to assure fidelity of mRNA translation and mouse development.

Authors:  Shihui Liu; Christopher Bachran; Pradeep Gupta; Sharmina Miller-Randolph; Hailun Wang; Devorah Crown; Yi Zhang; Alexander N Wein; Rajat Singh; Rasem Fattah; Stephen H Leppla
Journal:  Proc Natl Acad Sci U S A       Date:  2012-08-06       Impact factor: 11.205

Review 7.  De novo KCNH1 mutations in four patients with syndromic developmental delay, hypotonia and seizures.

Authors:  Ryoko Fukai; Hirotomo Saitsu; Yoshinori Tsurusaki; Yasunari Sakai; Kazuhiro Haginoya; Kazumasa Takahashi; Monika Weisz Hubshman; Nobuhiko Okamoto; Mitsuko Nakashima; Fumiaki Tanaka; Noriko Miyake; Naomichi Matsumoto
Journal:  J Hum Genet       Date:  2016-01-28       Impact factor: 3.172

8.  Identification of two candidate tumor suppressor genes on chromosome 17p13.3.

Authors:  D C Schultz; L Vanderveer; D B Berman; T C Hamilton; A J Wong; A K Godwin
Journal:  Cancer Res       Date:  1996-05-01       Impact factor: 12.701

Review 9.  The diphthamide modification pathway from Saccharomyces cerevisiae--revisited.

Authors:  Raffael Schaffrath; Wael Abdel-Fattah; Roland Klassen; Michael J R Stark
Journal:  Mol Microbiol       Date:  2014-11-17       Impact factor: 3.501

Review 10.  The biosynthesis and biological function of diphthamide.

Authors:  Xiaoyang Su; Zhewang Lin; Hening Lin
Journal:  Crit Rev Biochem Mol Biol       Date:  2013-08-23       Impact factor: 8.697

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  3 in total

1.  DPH1 syndrome: two novel variants and structural and functional analyses of seven missense variants identified in syndromic patients.

Authors:  Roser Urreizti; Klaus Mayer; Gilad D Evrony; Ulrich Brinkmann; Bryn D Webb; Susanna Balcells; Edith Said; Laura Castilla-Vallmanya; Neal A L Cody; Guillem Plasencia; Bruce D Gelb; Daniel Grinberg
Journal:  Eur J Hum Genet       Date:  2019-03-15       Impact factor: 4.246

2.  Importance of diphthamide modified EF2 for translational accuracy and competitive cell growth in yeast.

Authors:  Harmen Hawer; Koray Ütkür; Meike Arend; Klaus Mayer; Lorenz Adrian; Ulrich Brinkmann; Raffael Schaffrath
Journal:  PLoS One       Date:  2018-10-18       Impact factor: 3.240

3.  Diphthamide promotes TOR signaling by increasing the translation of proteins in the TORC1 pathway.

Authors:  Yugang Zhang; Zhewang Lin; Julia Zhu; Miao Wang; Hening Lin
Journal:  Proc Natl Acad Sci U S A       Date:  2021-09-14       Impact factor: 11.205

  3 in total

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