Literature DB >> 35537081

Seven years since the launch of the Matchmaker Exchange: The evolution of genomic matchmaking.

Kym M Boycott1, Danielle R Azzariti2, Ada Hamosh3, Heidi L Rehm2,4.   

Abstract

The Matchmaker Exchange (MME) was launched in 2015 to provide a robust mechanism to discover novel disease-gene relationships. It operates as a federated network connecting databases holding relevant data using a common application programming interface, where two or more users are looking for a match for the same gene (two-sided matchmaking). Seven years from its launch, it is clear that the MME is making outstanding contributions to understanding the morbid anatomy of the genome. The number of unique genes present across the MME has steadily increased over time; there are currently >13,520 unique genes (~68% of all protein-coding genes) connected across the MME's eight genomic matchmaking nodes, GeneMatcher, DECIPHER, PhenomeCentral, MyGene2, seqr, Initiative on Rare and Undiagnosed Disease, PatientMatcher, and the RD-Connect Genome-Phenome Analysis Platform. The collective data set accessible across the MME currently includes more than 120,000 cases from over 12,000 contributors in 98 countries. The discovery of potential new disease-gene relationships is happening daily and international collaborative teams are moving these advances forward to publication, now numbering well over 500. Expansion of data sharing into routine clinical practice by clinicians, genetic counselors, and clinical laboratories has ensured access to discovery for even more individuals with undiagnosed rare genetic diseases. Tens of thousands of patients and their family members have been directly or indirectly impacted by the discoveries facilitated by two-sided genomic matchmaking. MME supports further connections to the literature (PubCaseFinder) and to human and model organism resources (Monarch Initiative) and scientists (ModelMatcher). Efforts are now underway to explore additional approaches to matchmaking at the gene or variant level where there is only one querier (one-sided matchmaking). Genomic matchmaking has proven its utility over the past 7 years and will continue to facilitate discoveries in the years to come.
© 2022 Wiley Periodicals LLC.

Entities:  

Keywords:  GA4GH; IRDiRC; Matchmaker Exchange; matchmaking; novel gene-disease discovery; rare disease

Mesh:

Year:  2022        PMID: 35537081      PMCID: PMC9133175          DOI: 10.1002/humu.24373

Source DB:  PubMed          Journal:  Hum Mutat        ISSN: 1059-7794            Impact factor:   4.700


  48 in total

1.  Innovative genomic collaboration using the GENESIS (GEM.app) platform.

Authors:  Michael Gonzalez; Marni J Falk; Xiaowu Gai; Richard Postrel; Rebecca Schüle; Stephan Zuchner
Journal:  Hum Mutat       Date:  2015-08-12       Impact factor: 4.878

2.  Novel COL2A1 variant (c.619G>A, p.Gly207Arg) manifesting as a phenotype similar to progressive pseudorheumatoid dysplasia and spondyloepiphyseal dysplasia, Stanescu type.

Authors:  Julie Jurgens; Nara Sobreira; Peggy Modaff; Catherine A Reiser; Soo Hyun Seo; Moon-Woo Seong; Sung Sup Park; Ok Hwa Kim; Tae-Joon Cho; Richard M Pauli
Journal:  Hum Mutat       Date:  2015-08-06       Impact factor: 4.878

3.  "Matching" consent to purpose: The example of the Matchmaker Exchange.

Authors:  Stephanie O M Dyke; Bartha M Knoppers; Ada Hamosh; Helen V Firth; Matthew Hurles; Michael Brudno; Kym M Boycott; Anthony A Philippakis; Heidi L Rehm
Journal:  Hum Mutat       Date:  2017-07-12       Impact factor: 4.878

4.  The Canadian Rare Diseases Models and Mechanisms (RDMM) Network: Connecting Understudied Genes to Model Organisms.

Authors:  Kym M Boycott; Philippe M Campeau; Heather E Howley; Paul Pavlidis; Sanja Rogic; Christine Oriel; Jason N Berman; Robert M Hamilton; Geoffrey G Hicks; Howard D Lipshitz; Jean-Yves Masson; Eric A Shoubridge; Anne Junker; Michel R Leroux; Christopher R McMaster; Jaques L Michaud; Stuart E Turvey; David Dyment; A Micheil Innes; Clara D van Karnebeek; Anna Lehman; Ronald D Cohn; Ian M MacDonald; Richard A Rachubinski; Patrick Frosk; Anthony Vandersteen; Richard W Wozniak; Izabella A Pena; Xiao-Yan Wen; Thierry Lacaze-Masmonteil; Catharine Rankin; Philip Hieter
Journal:  Am J Hum Genet       Date:  2020-02-06       Impact factor: 11.025

5.  Japan's initiative on rare and undiagnosed diseases (IRUD): towards an end to the diagnostic odyssey.

Authors:  Takeya Adachi; Kazuo Kawamura; Yoshihiko Furusawa; Yuji Nishizaki; Noriaki Imanishi; Senkei Umehara; Kazuo Izumi; Makoto Suematsu
Journal:  Eur J Hum Genet       Date:  2017-07-05       Impact factor: 4.246

Review 6.  Model Organisms Facilitate Rare Disease Diagnosis and Therapeutic Research.

Authors:  Michael F Wangler; Shinya Yamamoto; Hsiao-Tuan Chao; Jennifer E Posey; Monte Westerfield; John Postlethwait; Philip Hieter; Kym M Boycott; Philippe M Campeau; Hugo J Bellen
Journal:  Genetics       Date:  2017-09       Impact factor: 4.562

7.  The Monarch Initiative in 2019: an integrative data and analytic platform connecting phenotypes to genotypes across species.

Authors:  Kent A Shefchek; Nomi L Harris; Michael Gargano; Nicolas Matentzoglu; Deepak Unni; Matthew Brush; Daniel Keith; Tom Conlin; Nicole Vasilevsky; Xingmin Aaron Zhang; James P Balhoff; Larry Babb; Susan M Bello; Hannah Blau; Yvonne Bradford; Seth Carbon; Leigh Carmody; Lauren E Chan; Valentina Cipriani; Alayne Cuzick; Maria Della Rocca; Nathan Dunn; Shahim Essaid; Petra Fey; Chris Grove; Jean-Phillipe Gourdine; Ada Hamosh; Midori Harris; Ingo Helbig; Maureen Hoatlin; Marcin Joachimiak; Simon Jupp; Kenneth B Lett; Suzanna E Lewis; Craig McNamara; Zoë M Pendlington; Clare Pilgrim; Tim Putman; Vida Ravanmehr; Justin Reese; Erin Riggs; Sofia Robb; Paola Roncaglia; James Seager; Erik Segerdell; Morgan Similuk; Andrea L Storm; Courtney Thaxon; Anne Thessen; Julius O B Jacobsen; Julie A McMurry; Tudor Groza; Sebastian Köhler; Damian Smedley; Peter N Robinson; Christopher J Mungall; Melissa A Haendel; Monica C Munoz-Torres; David Osumi-Sutherland
Journal:  Nucleic Acids Res       Date:  2020-01-08       Impact factor: 16.971

8.  100,000 Genomes Pilot on Rare-Disease Diagnosis in Health Care - Preliminary Report.

Authors:  Damian Smedley; Katherine R Smith; Antonio Martin; Ellen A Thomas; Ellen M McDonagh; Valentina Cipriani; Jamie M Ellingford; Gavin Arno; Arianna Tucci; Jana Vandrovcova; Georgia Chan; Hywel J Williams; Thiloka Ratnaike; Wei Wei; Kathleen Stirrups; Kristina Ibanez; Loukas Moutsianas; Matthias Wielscher; Anna Need; Michael R Barnes; Letizia Vestito; James Buchanan; Sarah Wordsworth; Sofie Ashford; Karola Rehmström; Emily Li; Gavin Fuller; Philip Twiss; Olivera Spasic-Boskovic; Sally Halsall; R Andres Floto; Kenneth Poole; Annette Wagner; Sarju G Mehta; Mark Gurnell; Nigel Burrows; Roger James; Christopher Penkett; Eleanor Dewhurst; Stefan Gräf; Rutendo Mapeta; Mary Kasanicki; Andrea Haworth; Helen Savage; Melanie Babcock; Martin G Reese; Mark Bale; Emma Baple; Christopher Boustred; Helen Brittain; Anna de Burca; Marta Bleda; Andrew Devereau; Dina Halai; Eik Haraldsdottir; Zerin Hyder; Dalia Kasperaviciute; Christine Patch; Dimitris Polychronopoulos; Angela Matchan; Razvan Sultana; Mina Ryten; Ana L T Tavares; Carolyn Tregidgo; Clare Turnbull; Matthew Welland; Suzanne Wood; Catherine Snow; Eleanor Williams; Sarah Leigh; Rebecca E Foulger; Louise C Daugherty; Olivia Niblock; Ivone U S Leong; Caroline F Wright; Jim Davies; Charles Crichton; James Welch; Kerrie Woods; Lara Abulhoul; Paul Aurora; Detlef Bockenhauer; Alexander Broomfield; Maureen A Cleary; Tanya Lam; Mehul Dattani; Emma Footitt; Vijeya Ganesan; Stephanie Grunewald; Sandrine Compeyrot-Lacassagne; Francesco Muntoni; Clarissa Pilkington; Rosaline Quinlivan; Nikhil Thapar; Colin Wallis; Lucy R Wedderburn; Austen Worth; Teofila Bueser; Cecilia Compton; Charu Deshpande; Hiva Fassihi; Eshika Haque; Louise Izatt; Dragana Josifova; Shehla Mohammed; Leema Robert; Sarah Rose; Deborah Ruddy; Robert Sarkany; Genevieve Say; Adam C Shaw; Agata Wolejko; Bishoy Habib; Gavin Burns; Sarah Hunter; Russell J Grocock; Sean J Humphray; Peter N Robinson; Melissa Haendel; Michael A Simpson; Siddharth Banka; Jill Clayton-Smith; Sofia Douzgou; Georgina Hall; Huw B Thomas; Raymond T O'Keefe; Michel Michaelides; Anthony T Moore; Sam Malka; Nikolas Pontikos; Andrew C Browning; Volker Straub; Gráinne S Gorman; Rita Horvath; Richard Quinton; Andrew M Schaefer; Patrick Yu-Wai-Man; Doug M Turnbull; Robert McFarland; Robert W Taylor; Emer O'Connor; Janice Yip; Katrina Newland; Huw R Morris; James Polke; Nicholas W Wood; Carolyn Campbell; Carme Camps; Kate Gibson; Nils Koelling; Tracy Lester; Andrea H Németh; Claire Palles; Smita Patel; Noemi B A Roy; Arjune Sen; John Taylor; Pilar Cacheiro; Julius O Jacobsen; Eleanor G Seaby; Val Davison; Lyn Chitty; Angela Douglas; Kikkeri Naresh; Dom McMullan; Sian Ellard; I Karen Temple; Andrew D Mumford; Gill Wilson; Phil Beales; Maria Bitner-Glindzicz; Graeme Black; John R Bradley; Paul Brennan; John Burn; Patrick F Chinnery; Perry Elliott; Frances Flinter; Henry Houlden; Melita Irving; William Newman; Shamima Rahman; John A Sayer; Jenny C Taylor; Andrew R Webster; Andrew O M Wilkie; Willem H Ouwehand; F Lucy Raymond; John Chisholm; Sue Hill; David Bentley; Richard H Scott; Tom Fowler; Augusto Rendon; Mark Caulfield
Journal:  N Engl J Med       Date:  2021-11-11       Impact factor: 176.079

9.  The RD-Connect Genome-Phenome Analysis Platform: Accelerating diagnosis, research, and gene discovery for rare diseases.

Authors:  Steven Laurie; Davide Piscia; Leslie Matalonga; Alberto Corvó; Marcos Fernández-Callejo; Carles Garcia-Linares; Carles Hernandez-Ferrer; Cristina Luengo; Inés Martínez; Anastasios Papakonstantinou; Daniel Picó-Amador; Joan Protasio; Rachel Thompson; Raul Tonda; Mònica Bayés; Gemma Bullich; Jordi Camps-Puchadas; Ida Paramonov; Jean-Rémi Trotta; Angel Alonso; Marcella Attimonelli; Christophe Béroud; Virginie Bros-Facer; Orion J Buske; Andrés Cañada-Pallarés; José M Fernández; Mats G Hansson; Rita Horvath; Julius O B Jacobsen; Rajaram Kaliyaperumal; Séverine Lair-Préterre; Luana Licata; Pedro Lopes; Estrella López-Martín; Deborah Mascalzoni; Lucia Monaco; Luis A Pérez-Jurado; Manuel Posada de la Paz; Jordi Rambla; Ana Rath; Olaf Riess; Peter N Robinson; David Salgado; Damian Smedley; Dylan Spalding; Peter A C 't Hoen; Ana Töpf; Irina Zaharieva; Holm Graessner; Ivo G Gut; Hanns Lochmüller; Sergi Beltran
Journal:  Hum Mutat       Date:  2022-06       Impact factor: 4.700

10.  Evidence for 28 genetic disorders discovered by combining healthcare and research data.

Authors:  Joanna Kaplanis; Kaitlin E Samocha; Laurens Wiel; Zhancheng Zhang; Kevin J Arvai; Ruth Y Eberhardt; Giuseppe Gallone; Stefan H Lelieveld; Hilary C Martin; Jeremy F McRae; Patrick J Short; Rebecca I Torene; Elke de Boer; Petr Danecek; Eugene J Gardner; Ni Huang; Jenny Lord; Iñigo Martincorena; Rolph Pfundt; Margot R F Reijnders; Alison Yeung; Helger G Yntema; Lisenka E L M Vissers; Jane Juusola; Caroline F Wright; Han G Brunner; Helen V Firth; David R FitzPatrick; Jeffrey C Barrett; Matthew E Hurles; Christian Gilissen; Kyle Retterer
Journal:  Nature       Date:  2020-10-14       Impact factor: 49.962

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  1 in total

1.  The RD-Connect Genome-Phenome Analysis Platform: Accelerating diagnosis, research, and gene discovery for rare diseases.

Authors:  Steven Laurie; Davide Piscia; Leslie Matalonga; Alberto Corvó; Marcos Fernández-Callejo; Carles Garcia-Linares; Carles Hernandez-Ferrer; Cristina Luengo; Inés Martínez; Anastasios Papakonstantinou; Daniel Picó-Amador; Joan Protasio; Rachel Thompson; Raul Tonda; Mònica Bayés; Gemma Bullich; Jordi Camps-Puchadas; Ida Paramonov; Jean-Rémi Trotta; Angel Alonso; Marcella Attimonelli; Christophe Béroud; Virginie Bros-Facer; Orion J Buske; Andrés Cañada-Pallarés; José M Fernández; Mats G Hansson; Rita Horvath; Julius O B Jacobsen; Rajaram Kaliyaperumal; Séverine Lair-Préterre; Luana Licata; Pedro Lopes; Estrella López-Martín; Deborah Mascalzoni; Lucia Monaco; Luis A Pérez-Jurado; Manuel Posada de la Paz; Jordi Rambla; Ana Rath; Olaf Riess; Peter N Robinson; David Salgado; Damian Smedley; Dylan Spalding; Peter A C 't Hoen; Ana Töpf; Irina Zaharieva; Holm Graessner; Ivo G Gut; Hanns Lochmüller; Sergi Beltran
Journal:  Hum Mutat       Date:  2022-06       Impact factor: 4.700

  1 in total

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