Literature DB >> 26215864

Morphology in the Digital Age: Integrating High-Resolution Description of Structural Alterations With Phenotypes and Genotypes.

Cynthia C Nast1, Kevin V Lemley2, Jeffrey B Hodgin3, Serena Bagnasco4, Carmen Avila-Casado5, Stephen M Hewitt6, Laura Barisoni7.   

Abstract

Conventional light microscopy has been used to characterize and classify renal diseases, evaluate histopathology in studies and trials, and educate renal pathologists and nephrologists. The advent of digital pathology, in which a glass slide can be scanned to create whole slide images (WSIs) for viewing and manipulating on a computer monitor, provides real and potential advantages compared with conventional light microscopy. Software tools such as annotation, morphometry, and image analysis can be applied to WSIs for studies or educational purposes, and the digital images are available globally to clinicians, pathologists, and investigators. New ways of assessing renal pathology with observational data collection may allow better morphologic correlations and integration with molecular and genetic signatures, refinements of classification schema, and understanding of disease pathogenesis. In multicenter studies, WSIs, which require additional quality assurance steps, provide efficiency by reducing slide shipping and consensus conference costs, and they allow slide viewing anytime and anywhere. Although validation studies for the routine diagnostic use of digital pathology still are needed, this is a powerful tool currently available for translational research, clinical trials, and education in renal pathology.
Copyright © 2015 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Digital pathology; NEPTUNE; glomerulus; renal pathology; virtual microscopy; virtual slide; whole slide imaging

Mesh:

Year:  2015        PMID: 26215864      PMCID: PMC4764351          DOI: 10.1016/j.semnephrol.2015.04.006

Source DB:  PubMed          Journal:  Semin Nephrol        ISSN: 0270-9295            Impact factor:   5.299


  41 in total

1.  Reliability, repeatability and reproducibility: analysis of measurement errors in continuous variables.

Authors:  J W Bartlett; C Frost
Journal:  Ultrasound Obstet Gynecol       Date:  2008-04       Impact factor: 7.299

2.  The introduction of renal biopsy into nephrology from 1901 to 1961: a paradigm of the forming of nephrology by technology.

Authors:  J S Cameron; J Hicks
Journal:  Am J Nephrol       Date:  1997       Impact factor: 3.754

3.  Validation of whole slide imaging in the primary diagnosis of gynaecological pathology in a University Hospital.

Authors:  Jaume Ordi; Paola Castillo; Adela Saco; Marta Del Pino; Oriol Ordi; Leonardo Rodríguez-Carunchio; Jose Ramírez
Journal:  J Clin Pathol       Date:  2014-10-29       Impact factor: 3.411

4.  Spectrum of steroid-resistant and congenital nephrotic syndrome in children: the PodoNet registry cohort.

Authors:  Agnes Trautmann; Monica Bodria; Fatih Ozaltin; Alaleh Gheisari; Anette Melk; Marta Azocar; Ali Anarat; Salim Caliskan; Francesco Emma; Jutta Gellermann; Jun Oh; Esra Baskin; Joanna Ksiazek; Giuseppe Remuzzi; Ozlem Erdogan; Sema Akman; Jiri Dusek; Tinatin Davitaia; Ozan Özkaya; Fotios Papachristou; Agnieszka Firszt-Adamczyk; Tomasz Urasinski; Sara Testa; Rafael T Krmar; Lidia Hyla-Klekot; Andrea Pasini; Z Birsin Özcakar; Peter Sallay; Nilgun Cakar; Monica Galanti; Joelle Terzic; Bilal Aoun; Alberto Caldas Afonso; Hanna Szymanik-Grzelak; Beata S Lipska; Sven Schnaidt; Franz Schaefer
Journal:  Clin J Am Soc Nephrol       Date:  2015-01-29       Impact factor: 8.237

Review 5.  Going glass to digital: virtual microscopy as a simulation-based revolution in pathology and laboratory science.

Authors:  Danielle Nelson; Amitai Ziv; Karim S Bandali
Journal:  J Clin Pathol       Date:  2012-07-12       Impact factor: 3.411

6.  Pathologic classification of diabetic nephropathy.

Authors:  Thijs W Cohen Tervaert; Antien L Mooyaart; Kerstin Amann; Arthur H Cohen; H Terence Cook; Cinthia B Drachenberg; Franco Ferrario; Agnes B Fogo; Mark Haas; Emile de Heer; Kensuke Joh; Laure H Noël; Jai Radhakrishnan; Surya V Seshan; Ingeborg M Bajema; Jan A Bruijn
Journal:  J Am Soc Nephrol       Date:  2010-02-18       Impact factor: 10.121

7.  Novel quantitative method to evaluate globotriaosylceramide inclusions in renal peritubular capillaries by virtual microscopy in patients with fabry disease.

Authors:  Laura Barisoni; J Charles Jennette; Robert Colvin; Sheela Sitaraman; Alexander Bragat; Jeff Castelli; Dan Walker; Pol Boudes
Journal:  Arch Pathol Lab Med       Date:  2012-07       Impact factor: 5.534

8.  The Oxford classification of IgA nephropathy: pathology definitions, correlations, and reproducibility.

Authors:  Ian S D Roberts; H Terence Cook; Stéphan Troyanov; Charles E Alpers; Alessandro Amore; Jonathan Barratt; Francois Berthoux; Stephen Bonsib; Jan A Bruijn; Daniel C Cattran; Rosanna Coppo; Vivette D'Agati; Giuseppe D'Amico; Steven Emancipator; Francesco Emma; John Feehally; Franco Ferrario; Fernando C Fervenza; Sandrine Florquin; Agnes Fogo; Colin C Geddes; Hermann-Josef Groene; Mark Haas; Andrew M Herzenberg; Prue A Hill; Ronald J Hogg; Stephen I Hsu; J Charles Jennette; Kensuke Joh; Bruce A Julian; Tetsuya Kawamura; Fernand M Lai; Lei-Shi Li; Philip K T Li; Zhi-Hong Liu; Bruce Mackinnon; Sergio Mezzano; F Paolo Schena; Yasuhiko Tomino; Patrick D Walker; Haiyan Wang; Jan J Weening; Nori Yoshikawa; Hong Zhang
Journal:  Kidney Int       Date:  2009-07-01       Impact factor: 10.612

9.  Genotype-phenotype correlation in Chinese patients with pulmonary mixed type adenocarcinoma: Relationship between histologic subtypes, TITF-1/SP-A expressions and EGFR mutations.

Authors:  Xing-Ya Li; Yan-Qiu Zhao; Rui-Qing Liu; Jian-Bo Zhang; Jie Ma; Li-Juan Chen; Xiu-Feng Hu
Journal:  Pathol Res Pract       Date:  2013-12-05       Impact factor: 3.250

Review 10.  Genetic kidney diseases.

Authors:  Friedhelm Hildebrandt
Journal:  Lancet       Date:  2010-04-10       Impact factor: 79.321

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  17 in total

1.  Reproducibility of the NEPTUNE descriptor-based scoring system on whole-slide images and histologic and ultrastructural digital images.

Authors:  Laura Barisoni; Jonathan P Troost; Cynthia Nast; Serena Bagnasco; Carmen Avila-Casado; Jeffrey Hodgin; Matthew Palmer; Avi Rosenberg; Adil Gasim; Chrysta Liensziewski; Lino Merlino; Hui-Ping Chien; Anthony Chang; Shane M Meehan; Joseph Gaut; Peter Song; Lawrence Holzman; Debbie Gibson; Matthias Kretzler; Brenda W Gillespie; Stephen M Hewitt
Journal:  Mod Pathol       Date:  2016-04-22       Impact factor: 7.842

2.  Interstitial fibrosis scored on whole-slide digital imaging of kidney biopsies is a predictor of outcome in proteinuric glomerulopathies.

Authors:  Laura H Mariani; Sebastian Martini; Laura Barisoni; Pietro A Canetta; Jonathan P Troost; Jeffrey B Hodgin; Matthew Palmer; Avi Z Rosenberg; Kevin V Lemley; Hui-Ping Chien; Jarcy Zee; Abigail Smith; Gerald B Appel; Howard Trachtman; Stephen M Hewitt; Matthias Kretzler; Serena M Bagnasco
Journal:  Nephrol Dial Transplant       Date:  2018-02-01       Impact factor: 5.992

3.  Cisplatin effect on digital cytomorphometric and bioinformatic tumor cell characteristics in rat ovarian cancer model-a preliminary study.

Authors:  Nadezhda T Zhilinskaya; Vladimir G Bespalov; Alexander L Semenov; Elena D Ermakova; Grigory V Tochilnikov; Nadezhda V Barakova; Valerii A Alexandrov; Denis A Baranenko
Journal:  Pharmacol Rep       Date:  2021-02-19       Impact factor: 3.024

4.  Glo-In-One: holistic glomerular detection, segmentation, and lesion characterization with large-scale web image mining.

Authors:  Tianyuan Yao; Yuzhe Lu; Jun Long; Aadarsh Jha; Zheyu Zhu; Zuhayr Asad; Haichun Yang; Agnes B Fogo; Yuankai Huo
Journal:  J Med Imaging (Bellingham)       Date:  2022-06-20

5.  Prognostic Implications of a Morphometric Evaluation for Chronic Changes on All Diagnostic Native Kidney Biopsies.

Authors:  Aleksandar Denic; Marija Bogojevic; Aidan F Mullan; Moldovan Sabov; Muhammad S Asghar; Sanjeev Sethi; Maxwell L Smith; Fernando C Fervenza; Richard J Glassock; Musab S Hommos; Andrew D Rule
Journal:  J Am Soc Nephrol       Date:  2022-08-03       Impact factor: 14.978

6.  Kidney Biopsy Features Most Predictive of Clinical Outcomes in the Spectrum of Minimal Change Disease and Focal Segmental Glomerulosclerosis.

Authors:  Jarcy Zee; Qian Liu; Abigail R Smith; Jeffrey B Hodgin; Avi Rosenberg; Brenda W Gillespie; Lawrence B Holzman; Laura Barisoni; Laura H Mariani
Journal:  J Am Soc Nephrol       Date:  2022-05-17       Impact factor: 14.978

Review 7.  Digital pathology in nephrology clinical trials, research, and pathology practice.

Authors:  Laura Barisoni; Jeffrey B Hodgin
Journal:  Curr Opin Nephrol Hypertens       Date:  2017-11       Impact factor: 2.894

8.  Reproducibility and Feasibility of Strategies for Morphologic Assessment of Renal Biopsies Using the Nephrotic Syndrome Study Network Digital Pathology Scoring System.

Authors:  Jarcy Zee; Jeffrey B Hodgin; Laura H Mariani; Joseph P Gaut; Matthew B Palmer; Serena M Bagnasco; Avi Z Rosenberg; Stephen M Hewitt; Lawrence B Holzman; Brenda W Gillespie; Laura Barisoni
Journal:  Arch Pathol Lab Med       Date:  2018-02-19       Impact factor: 5.534

9.  Ultrastructural Characterization of Proteinuric Patients Predicts Clinical Outcomes.

Authors:  Virginie Royal; Jarcy Zee; Qian Liu; Carmen Avila-Casado; Abigail R Smith; Gang Liu; Laura H Mariani; Stephen Hewitt; Lawrence B Holzman; Brenda W Gillespie; Jeffrey B Hodgin; Laura Barisoni
Journal:  J Am Soc Nephrol       Date:  2020-02-21       Impact factor: 10.121

10.  CureGN Study Rationale, Design, and Methods: Establishing a Large Prospective Observational Study of Glomerular Disease.

Authors:  Laura H Mariani; Andrew S Bomback; Pietro A Canetta; Michael F Flessner; Margaret Helmuth; Michelle A Hladunewich; Jonathan J Hogan; Krzysztof Kiryluk; Patrick H Nachman; Cynthia C Nast; Michelle N Rheault; Dana V Rizk; Howard Trachtman; Scott E Wenderfer; Corinna Bowers; Peg Hill-Callahan; Maddalena Marasa; Caroline J Poulton; Adelaide Revell; Suzanne Vento; Laura Barisoni; Dan Cattran; Vivette D'Agati; J Charles Jennette; Jon B Klein; Louis-Philippe Laurin; Katherine Twombley; Ronald J Falk; Ali G Gharavi; Brenda W Gillespie; Debbie S Gipson; Larry A Greenbaum; Lawrence B Holzman; Matthias Kretzler; Bruce Robinson; William E Smoyer; Lisa M Guay-Woodford
Journal:  Am J Kidney Dis       Date:  2018-11-09       Impact factor: 11.072

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