Literature DB >> 27599850

Applications of CRISPR Genome Engineering in Cell Biology.

Fangyuan Wang1, Lei S Qi2.   

Abstract

Recent advances in genome engineering are starting a revolution in biological research and translational applications. The clustered regularly interspaced short palindromic repeats (CRISPR)-associated RNA-guided endonuclease CRISPR associated protein 9 (Cas9) and its variants enable diverse manipulations of genome function. In this review, we describe the development of Cas9 tools for a variety of applications in cell biology research, including the study of functional genomics, the creation of transgenic animal models, and genomic imaging. Novel genome engineering methods offer a new avenue to understand the causality between the genome and phenotype, thus promising a fuller understanding of cell biology.
Copyright © 2016 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  CRISPR/Cas9; CRISPRi/a; cell biology; gene editing; gene regulation

Mesh:

Substances:

Year:  2016        PMID: 27599850      PMCID: PMC5077632          DOI: 10.1016/j.tcb.2016.08.004

Source DB:  PubMed          Journal:  Trends Cell Biol        ISSN: 0962-8924            Impact factor:   20.808


  124 in total

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Authors:  S A Wolfe; L Nekludova; C O Pabo
Journal:  Annu Rev Biophys Biomol Struct       Date:  2000

2.  Structure and Engineering of Francisella novicida Cas9.

Authors:  Hisato Hirano; Jonathan S Gootenberg; Takuro Horii; Omar O Abudayyeh; Mika Kimura; Patrick D Hsu; Takanori Nakane; Ryuichiro Ishitani; Izuho Hatada; Feng Zhang; Hiroshi Nishimasu; Osamu Nureki
Journal:  Cell       Date:  2016-02-11       Impact factor: 41.582

3.  Highly efficient endogenous human gene correction using designed zinc-finger nucleases.

Authors:  Fyodor D Urnov; Jeffrey C Miller; Ya-Li Lee; Christian M Beausejour; Jeremy M Rock; Sheldon Augustus; Andrew C Jamieson; Matthew H Porteus; Philip D Gregory; Michael C Holmes
Journal:  Nature       Date:  2005-04-03       Impact factor: 49.962

4.  A Comprehensive, CRISPR-based Functional Analysis of Essential Genes in Bacteria.

Authors:  Jason M Peters; Alexandre Colavin; Handuo Shi; Tomasz L Czarny; Matthew H Larson; Spencer Wong; John S Hawkins; Candy H S Lu; Byoung-Mo Koo; Elizabeth Marta; Anthony L Shiver; Evan H Whitehead; Jonathan S Weissman; Eric D Brown; Lei S Qi; Kerwyn Casey Huang; Carol A Gross
Journal:  Cell       Date:  2016-05-26       Impact factor: 41.582

5.  FTO Obesity Variant Circuitry and Adipocyte Browning in Humans.

Authors:  Melina Claussnitzer; Simon N Dankel; Kyoung-Han Kim; Gerald Quon; Wouter Meuleman; Christine Haugen; Viktoria Glunk; Isabel S Sousa; Jacqueline L Beaudry; Vijitha Puviindran; Nezar A Abdennur; Jannel Liu; Per-Arne Svensson; Yi-Hsiang Hsu; Daniel J Drucker; Gunnar Mellgren; Chi-Chung Hui; Hans Hauner; Manolis Kellis
Journal:  N Engl J Med       Date:  2015-08-19       Impact factor: 91.245

6.  Enzymatically Generated CRISPR Libraries for Genome Labeling and Screening.

Authors:  Andrew B Lane; Magdalena Strzelecka; Andreas Ettinger; Andrew W Grenfell; Torsten Wittmann; Rebecca Heald
Journal:  Dev Cell       Date:  2015-07-23       Impact factor: 12.270

7.  Programmable RNA Tracking in Live Cells with CRISPR/Cas9.

Authors:  David A Nelles; Mark Y Fang; Mitchell R O'Connell; Jia L Xu; Sebastian J Markmiller; Jennifer A Doudna; Gene W Yeo
Journal:  Cell       Date:  2016-03-17       Impact factor: 41.582

8.  Dynamic imaging of genomic loci in living human cells by an optimized CRISPR/Cas system.

Authors:  Baohui Chen; Luke A Gilbert; Beth A Cimini; Joerg Schnitzbauer; Wei Zhang; Gene-Wei Li; Jason Park; Elizabeth H Blackburn; Jonathan S Weissman; Lei S Qi; Bo Huang
Journal:  Cell       Date:  2013-12-19       Impact factor: 41.582

9.  Genome editing with RNA-guided Cas9 nuclease in zebrafish embryos.

Authors:  Nannan Chang; Changhong Sun; Lu Gao; Dan Zhu; Xiufei Xu; Xiaojun Zhu; Jing-Wei Xiong; Jianzhong Jeff Xi
Journal:  Cell Res       Date:  2013-03-26       Impact factor: 25.617

10.  RNA-guided gene activation by CRISPR-Cas9-based transcription factors.

Authors:  Pablo Perez-Pinera; D Dewran Kocak; Christopher M Vockley; Andrew F Adler; Ami M Kabadi; Lauren R Polstein; Pratiksha I Thakore; Katherine A Glass; David G Ousterout; Kam W Leong; Farshid Guilak; Gregory E Crawford; Timothy E Reddy; Charles A Gersbach
Journal:  Nat Methods       Date:  2013-07-25       Impact factor: 28.547

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  22 in total

1.  SRSF3-Regulated RNA Alternative Splicing Promotes Glioblastoma Tumorigenicity by Affecting Multiple Cellular Processes.

Authors:  Xiao Song; Xuechao Wan; Tianzhi Huang; Chang Zeng; Namratha Sastry; Bingli Wu; C David James; Craig Horbinski; Ichiro Nakano; Wei Zhang; Bo Hu; Shi-Yuan Cheng
Journal:  Cancer Res       Date:  2019-08-28       Impact factor: 12.701

Review 2.  Dysregulation of histone methyltransferases in breast cancer - Opportunities for new targeted therapies?

Authors:  Ewa M Michalak; Jane E Visvader
Journal:  Mol Oncol       Date:  2016-09-23       Impact factor: 6.603

3.  Nucleic Acid Delivery from Granular Hydrogels.

Authors:  Evan Kurt; Tatiana Segura
Journal:  Adv Healthc Mater       Date:  2021-11-23       Impact factor: 9.933

4.  Efficient Generation of Multi-gene Knockout Cell Lines and Patient-derived Xenografts Using Multi-colored Lenti-CRISPR-Cas9.

Authors:  Lena Behrmann; Scott McComb; Júlia Aguadé-Gorgorió; Yun Huang; Mario Hermann; Pawel Pelczar; Adriano Aguzzi; Jean-Pierre Bourquin; Beat C Bornhauser
Journal:  Bio Protoc       Date:  2017-04-05

Review 5.  Two-photon probes for in vivo multicolor microscopy of the structure and signals of brain cells.

Authors:  Clément Ricard; Erica D Arroyo; Cynthia X He; Carlos Portera-Cailliau; Gabriel Lepousez; Marco Canepari; Daniel Fiole
Journal:  Brain Struct Funct       Date:  2018-05-11       Impact factor: 3.270

Review 6.  Genome engineering of stem cell organoids for disease modeling.

Authors:  Yingmin Sun; Qiurong Ding
Journal:  Protein Cell       Date:  2017-01-19       Impact factor: 14.870

7.  A case report of novel mutation in PRF1 gene, which causes familial autosomal recessive hemophagocytic lymphohistiocytosis.

Authors:  Mohammad Reza Bordbar; Farzaneh Modarresi; Mohammad Ali Farazi Fard; Hassan Dastsooz; Nader Shakib Azad; Mohammad Ali Faghihi
Journal:  BMC Med Genet       Date:  2017-05-03       Impact factor: 2.103

Review 8.  How to Train a Cell-Cutting-Edge Molecular Tools.

Authors:  Jakub Czapiński; Michał Kiełbus; Joanna Kałafut; Michał Kos; Andrzej Stepulak; Adolfo Rivero-Müller
Journal:  Front Chem       Date:  2017-03-10       Impact factor: 5.221

Review 9.  Jmjd6, a JmjC Dioxygenase with Many Interaction Partners and Pleiotropic Functions.

Authors:  Janice Kwok; Marie O'Shea; David A Hume; Andreas Lengeling
Journal:  Front Genet       Date:  2017-03-16       Impact factor: 4.599

10.  CRISPR/Cas9 mediated targeting of multiple genes in Dictyostelium.

Authors:  Ryoya Sekine; Takefumi Kawata; Tetsuya Muramoto
Journal:  Sci Rep       Date:  2018-05-31       Impact factor: 4.379

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