Literature DB >> 26211369

Genetically modified proteins: functional improvement and chimeragenesis.

Larissa Balabanova1,2, Vasily Golotin1,2, Anna Podvolotskaya2, Valery Rasskazov1.   

Abstract

This review focuses on the emerging role of site-specific mutagenesis and chimeragenesis for the functional improvement of proteins in areas where traditional protein engineering methods have been extensively used and practically exhausted. The novel path for the creation of the novel proteins has been created on the farther development of the new structure and sequence optimization algorithms for generating and designing the accurate structure models in result of x-ray crystallography studies of a lot of proteins and their mutant forms. Artificial genetic modifications aim to expand nature's repertoire of biomolecules. One of the most exciting potential results of mutagenesis or chimeragenesis finding could be design of effective diagnostics, bio-therapeutics and biocatalysts. A sampling of recent examples is listed below for the in vivo and in vitro genetically improvement of various binding protein and enzyme functions, with references for more in-depth study provided for the reader's benefit.

Keywords:  activity; antibodies; enzymes; epitopes; hybrid proteins; lectins; molecular structure; site-specific mutagenesis; specificity

Mesh:

Substances:

Year:  2015        PMID: 26211369      PMCID: PMC4825830          DOI: 10.1080/21655979.2015.1075674

Source DB:  PubMed          Journal:  Bioengineered        ISSN: 2165-5979            Impact factor:   3.269


  90 in total

Review 1.  Better library design: data-driven protein engineering.

Authors:  Javier F Chaparro-Riggers; Karen M Polizzi; Andreas S Bommarius
Journal:  Biotechnol J       Date:  2007-02       Impact factor: 4.677

2.  Evolutionary diversification of the multimeric states of proteins.

Authors:  Michael Lynch
Journal:  Proc Natl Acad Sci U S A       Date:  2013-07-08       Impact factor: 11.205

3.  Prediction and experimental validation of enzyme substrate specificity in protein structures.

Authors:  Shivas R Amin; Serkan Erdin; R Matthew Ward; Rhonald C Lua; Olivier Lichtarge
Journal:  Proc Natl Acad Sci U S A       Date:  2013-10-21       Impact factor: 11.205

4.  A designed bifunctional laccase/β-1,3-1,4-glucanase enzyme shows synergistic sugar release from milled sugarcane bagasse.

Authors:  G P Furtado; L F Ribeiro; M R Lourenzoni; R J Ward
Journal:  Protein Eng Des Sel       Date:  2012-09-25       Impact factor: 1.650

Review 5.  Multifunctional enzymes in archaea: promiscuity and moonlight.

Authors:  Baolei Jia; Gang-Won Cheong; Shihong Zhang
Journal:  Extremophiles       Date:  2013-01-03       Impact factor: 2.395

Review 6.  Advantages of proteins being disordered.

Authors:  Zhirong Liu; Yongqi Huang
Journal:  Protein Sci       Date:  2014-03-17       Impact factor: 6.725

7.  Systems engineering of tyrosine 195, tyrosine 260, and glutamine 265 in cyclodextrin glycosyltransferase from Paenibacillus macerans to enhance maltodextrin specificity for 2-O-(D)-glucopyranosyl-(L)-ascorbic acid synthesis.

Authors:  Ruizhi Han; Long Liu; Hyun-Dong Shin; Rachel R Chen; Jianghua Li; Guocheng Du; Jian Chen
Journal:  Appl Environ Microbiol       Date:  2012-11-16       Impact factor: 4.792

8.  Efficient glycosynthase mutant derived from Mucor hiemalis endo-beta-N-acetylglucosaminidase capable of transferring oligosaccharide from both sugar oxazoline and natural N-glycan.

Authors:  Midori Umekawa; Cishan Li; Takayuki Higashiyama; Wei Huang; Hisashi Ashida; Kenji Yamamoto; Lai-Xi Wang
Journal:  J Biol Chem       Date:  2009-10-30       Impact factor: 5.157

Review 9.  Production of biopharmaceutical proteins by yeast: advances through metabolic engineering.

Authors:  Jens Nielsen
Journal:  Bioengineered       Date:  2012-11-12       Impact factor: 3.269

Review 10.  Optimization to low temperature activity in psychrophilic enzymes.

Authors:  Caroline Struvay; Georges Feller
Journal:  Int J Mol Sci       Date:  2012-09-17       Impact factor: 6.208

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  4 in total

Review 1.  Bioengineered non-coding RNA agent (BERA) in action.

Authors:  Zhijian Duan; Ai-Ming Yu
Journal:  Bioengineered       Date:  2016-07-14       Impact factor: 3.269

2.  ZINC40099027 promotes monolayer circular defect closure by a novel pathway involving cytosolic activation of focal adhesion kinase and downstream paxillin and ERK1/2.

Authors:  Sema Oncel; Marc D Basson
Journal:  Cell Tissue Res       Date:  2022-08-24       Impact factor: 4.051

Review 3.  Genetic Modification Approaches for Parasporins Bacillus thuringiensis Proteins with Anticancer Activity.

Authors:  Miguel O Suárez-Barrera; Lydia Visser; Paola Rondón-Villarreal; Diego F Herrera-Pineda; Juan S Alarcón-Aldana; Anke Van den Berg; Jahir Orozco; Efraín H Pinzón-Reyes; Ernesto Moreno; Nohora J Rueda-Forero
Journal:  Molecules       Date:  2021-12-10       Impact factor: 4.411

4.  Estimation of polymorphisms in the drug-metabolizing enzyme, cytochrome P450 2C19 gene in six major ethnicities of Pakistan.

Authors:  Sagheer Ahmed; Saima Gul; Muhammad Akhlaq; Abrar Hussain; Sidrah Tariq Khan; Halimur Rehman; Muhammad Hanif Bangash; Fadwa Al Mughairbi; Muhammad Hamid Hamdard
Journal:  Bioengineered       Date:  2021-12       Impact factor: 3.269

  4 in total

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