Literature DB >> 23283522

Multifunctional enzymes in archaea: promiscuity and moonlight.

Baolei Jia1, Gang-Won Cheong, Shihong Zhang.   

Abstract

Enzymes from many archaea colonizing extreme environments are of great interest because of their potential for various biotechnological processes and scientific value of evolution. Many enzymes from archaea have been reported to catalyze promiscuous reactions or moonlight in different functions. Here, we summarize known archaeal enzymes of both groups that include different kinds of proteins. Knowledge of their biochemical properties and three-dimensional structures has proved invaluable in understanding mechanism, application, and evolutionary implications of this manifestation. In addition, the review also summarizes the methods to unravel the extra function which almost was discovered serendipitously. The study of these amazing enzymes will provide clues to optimize protein engineering applications and how enzymes might have evolved on Earth.

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Year:  2013        PMID: 23283522     DOI: 10.1007/s00792-012-0509-1

Source DB:  PubMed          Journal:  Extremophiles        ISSN: 1431-0651            Impact factor:   2.395


  101 in total

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Authors:  Brandon d Moore
Journal:  Trends Plant Sci       Date:  2004-05       Impact factor: 18.313

2.  Crystal structure of the Pyrococcus horikoshii isopropylmalate isomerase small subunit provides insight into the dual substrate specificity of the enzyme.

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Journal:  J Mol Biol       Date:  2004-11-19       Impact factor: 5.469

3.  Dps-like protein from the hyperthermophilic archaeon Pyrococcus furiosus.

Authors:  Bradley Ramsay; Blake Wiedenheft; Mark Allen; George H Gauss; C Martin Lawrence; Mark Young; Trevor Douglas
Journal:  J Inorg Biochem       Date:  2006-01-18       Impact factor: 4.155

4.  Archaeal primase: bridging the gap between RNA and DNA polymerases.

Authors:  A A Bocquier; L Liu; I K Cann; K Komori; D Kohda; Y Ishino
Journal:  Curr Biol       Date:  2001-03-20       Impact factor: 10.834

5.  Structurally informed site-directed mutagenesis of a stereochemically promiscuous aldolase to afford stereochemically complementary biocatalysts.

Authors:  Sylvain F Royer; Luke Haslett; Susan J Crennell; David W Hough; Michael J Danson; Steven D Bull
Journal:  J Am Chem Soc       Date:  2010-08-25       Impact factor: 15.419

6.  Biochemical characterization of glyceraldehyde-3-phosphate dehydrogenase from Thermococcus kodakarensis KOD1.

Authors:  Baolei Jia; Le Thuy Linh; Sangmin Lee; Bang Phuong Pham; Jinliang Liu; Hongyu Pan; Shihong Zhang; Gang-Won Cheong
Journal:  Extremophiles       Date:  2011-03-16       Impact factor: 2.395

Review 7.  Enzyme (re)design: lessons from natural evolution and computation.

Authors:  John A Gerlt; Patricia C Babbitt
Journal:  Curr Opin Chem Biol       Date:  2009-02-23       Impact factor: 8.822

8.  Archaic chaos: intrinsically disordered proteins in Archaea.

Authors:  Bin Xue; Robert W Williams; Christopher J Oldfield; A Keith Dunker; Vladimir N Uversky
Journal:  BMC Syst Biol       Date:  2010-05-28

9.  Gluconate dehydratase from the promiscuous Entner-Doudoroff pathway in Sulfolobus solfataricus.

Authors:  Henry J Lamble; Christine C Milburn; Garry L Taylor; David W Hough; Michael J Danson
Journal:  FEBS Lett       Date:  2004-10-08       Impact factor: 4.124

10.  Definition of a metal-dependent/Li(+)-inhibited phosphomonoesterase protein family based upon a conserved three-dimensional core structure.

Authors:  J D York; J W Ponder; P W Majerus
Journal:  Proc Natl Acad Sci U S A       Date:  1995-05-23       Impact factor: 11.205

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  13 in total

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3.  β-alanine biosynthesis in Methanocaldococcus jannaschii.

Authors:  Yu Wang; Huimin Xu; Robert H White
Journal:  J Bacteriol       Date:  2014-06-02       Impact factor: 3.490

4.  A High-Throughput Mass-Spectrometry-Based Assay for Identifying the Biochemical Functions of Putative Glycosidases.

Authors:  Tianyuan Peng; Gabe Nagy; Jonathan C Trinidad; Joy Marie Jackson; Nicola L B Pohl
Journal:  Chembiochem       Date:  2017-10-27       Impact factor: 3.164

5.  A 1-Cys Peroxiredoxin from a Thermophilic Archaeon Moonlights as a Molecular Chaperone to Protect Protein and DNA against Stress-Induced Damage.

Authors:  Sangmin Lee; Baolei Jia; Jinliang Liu; Bang Phuong Pham; Jae Myeong Kwak; Yuan Hu Xuan; Gang-Won Cheong
Journal:  PLoS One       Date:  2015-05-01       Impact factor: 3.240

Review 6.  Profiling the orphan enzymes.

Authors:  Maria Sorokina; Mark Stam; Claudine Médigue; Olivier Lespinet; David Vallenet
Journal:  Biol Direct       Date:  2014-06-06       Impact factor: 4.540

Review 7.  Enzyme recruitment and its role in metabolic expansion.

Authors:  Cindy Schulenburg; Brian G Miller
Journal:  Biochemistry       Date:  2014-01-31       Impact factor: 3.162

Review 8.  High-throughput recombinant protein expression in Escherichia coli: current status and future perspectives.

Authors:  Baolei Jia; Che Ok Jeon
Journal:  Open Biol       Date:  2016-08       Impact factor: 6.411

9.  Tracing the Repertoire of Promiscuous Enzymes along the Metabolic Pathways in Archaeal Organisms.

Authors:  Mario Alberto Martínez-Núñez; Zuemy Rodríguez-Escamilla; Katya Rodríguez-Vázquez; Ernesto Pérez-Rueda
Journal:  Life (Basel)       Date:  2017-07-13

10.  The identification of a novel Sulfolobus islandicus CAMP-like peptide points to archaeal microorganisms as cell factories for the production of antimicrobial molecules.

Authors:  Eugenio Notomista; Annarita Falanga; Salvatore Fusco; Luciano Pirone; Anna Zanfardino; Stefania Galdiero; Mario Varcamonti; Emilia Pedone; Patrizia Contursi
Journal:  Microb Cell Fact       Date:  2015-09-04       Impact factor: 5.328

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