Literature DB >> 26207083

In Vitro Reconstitution of Metabolic Pathways: Insights into Nature's Chemical Logic.

Brian Lowry1, Christopher T Walsh2, Chaitan Khosla3.   

Abstract

In vitro analysis of metabolic pathways is becoming a powerful method to gain a deeper understanding of Nature's core biochemical transformations. With astounding advancements in biotechnology, purification of a metabolic pathway's constitutive enzymatic components is becoming a tractable problem, and such in vitro studies allow scientists to capture the finer details of enzymatic reaction mechanisms, kinetics, and the identity of organic product molecules. In this review, we present eleven metabolic pathways that have been the subject of in vitro reconstitution studies in the literature in recent years. In addition, we have selected and analyzed subset of four case studies within these eleven examples that exemplify remarkable organic chemistry occurring within biology. These examples serves as tangible reminders that Nature's biochemical routes obey the fundamental principles of organic chemistry, and the chemical mechanisms are reminiscent of those featured in traditional synthetic organic routes. The illustrations of biosynthetic chemistry depicted in this review may inspire the development of biomimetic chemistries via abiotic chemical techniques.

Entities:  

Keywords:  Antibiotics; Antifungal Agents; Antiviral Agents; Biosynthesis; Enzymes; Natural Products

Year:  2015        PMID: 26207083      PMCID: PMC4507746          DOI: 10.1055/s-0034-1380264

Source DB:  PubMed          Journal:  Synlett        ISSN: 0936-5214            Impact factor:   2.454


  74 in total

Review 1.  Chemistry and biology of biosynthetic Diels-Alder reactions.

Authors:  Emily M Stocking; Robert M Williams
Journal:  Angew Chem Int Ed Engl       Date:  2003-07-14       Impact factor: 15.336

2.  The structure of docking domains in modular polyketide synthases.

Authors:  R William Broadhurst; Daniel Nietlispach; Michael P Wheatcroft; Peter F Leadlay; Kira J Weissman
Journal:  Chem Biol       Date:  2003-08

Review 3.  Polyketide and nonribosomal peptide antibiotics: modularity and versatility.

Authors:  Christopher T Walsh
Journal:  Science       Date:  2004-03-19       Impact factor: 47.728

Review 4.  Total biosynthesis: in vitro reconstitution of polyketide and nonribosomal peptide pathways.

Authors:  Elizabeth S Sattely; Michael A Fischbach; Christopher T Walsh
Journal:  Nat Prod Rep       Date:  2008-05-23       Impact factor: 13.423

Review 5.  Regulation of the mevalonate pathway.

Authors:  J L Goldstein; M S Brown
Journal:  Nature       Date:  1990-02-01       Impact factor: 49.962

Review 6.  Biosynthesis of polyketides in heterologous hosts.

Authors:  B A Pfeifer; C Khosla
Journal:  Microbiol Mol Biol Rev       Date:  2001-03       Impact factor: 11.056

7.  Heterologous expression, purification, reconstitution and kinetic analysis of an extended type II polyketide synthase.

Authors:  R J Zawada; C Khosla
Journal:  Chem Biol       Date:  1999-09

Review 8.  Insights from the sea: structural biology of marine polyketide synthases.

Authors:  David L Akey; Jennifer J Gehret; Dheeraj Khare; Janet L Smith
Journal:  Nat Prod Rep       Date:  2012-04-13       Impact factor: 13.423

Review 9.  Biosynthesis of aromatic polyketides in bacteria.

Authors:  Abhirup Das; Chaitan Khosla
Journal:  Acc Chem Res       Date:  2009-05-19       Impact factor: 22.384

Review 10.  Polyketide synthesis: prospects for hybrid antibiotics.

Authors:  L Katz; S Donadio
Journal:  Annu Rev Microbiol       Date:  1993       Impact factor: 15.500

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  7 in total

Review 1.  Natural product discovery from the human microbiome.

Authors:  Matthew R Wilson; Li Zha; Emily P Balskus
Journal:  J Biol Chem       Date:  2017-04-07       Impact factor: 5.157

2.  Endless Resistance. Endless Antibiotics?

Authors:  Jed F Fisher; Shahriar Mobashery
Journal:  Medchemcomm       Date:  2015-11-03       Impact factor: 3.597

3.  In Vitro Reconstruction of Nonribosomal Peptide Biosynthesis Directly from DNA Using Cell-Free Protein Synthesis.

Authors:  Anthony W Goering; Jian Li; Ryan A McClure; Regan J Thomson; Michael C Jewett; Neil L Kelleher
Journal:  ACS Synth Biol       Date:  2016-08-09       Impact factor: 5.110

4.  Quo vadis, enzymology?

Authors:  Chaitan Khosla
Journal:  Nat Chem Biol       Date:  2015-07       Impact factor: 15.040

Review 5.  Mini-review: In vitro Metabolic Engineering for Biomanufacturing of High-value Products.

Authors:  Weihua Guo; Jiayuan Sheng; Xueyang Feng
Journal:  Comput Struct Biotechnol J       Date:  2017-01-19       Impact factor: 7.271

Review 6.  Modules for in vitro metabolic engineering: Pathway assembly for bio-based production of value-added chemicals.

Authors:  Hironori Taniguchi; Kenji Okano; Kohsuke Honda
Journal:  Synth Syst Biotechnol       Date:  2017-06-07

Review 7.  Cell-free synthetic biology for in vitro biosynthesis of pharmaceutical natural products.

Authors:  Jian Li; Lingkai Zhang; Wanqiu Liu
Journal:  Synth Syst Biotechnol       Date:  2018-02-17
  7 in total

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