Literature DB >> 26204056

Tryptophan Lyase (NosL): Mechanistic Insights from Substrate Analogues and Mutagenesis.

Dhananjay M Bhandari, Hui Xu, Yvain Nicolet1, Juan C Fontecilla-Camps1, Tadhg P Begley.   

Abstract

NosL is a member of a family of radical S-adenosylmethionine enzymes that catalyze the cleavage of the Cα-Cβ bond of aromatic amino acids. In this paper, we describe a set of experiments with substrate analogues and mutants for probing the early steps of the NosL mechanism. We provide biochemical evidence in support of the structural studies showing that the 5'-deoxyadenosyl radical abstracts a hydrogen atom from the amino group of tryptophan. We demonstrate that d-tryptophan is a substrate for NosL but shows relaxed regio control of the first β-scission reaction. Mutagenesis studies confirm that Arg323 is important for controlling the regiochemistry of the β-scission reaction and that Ser340 binds the substrate by hydrogen bonding to the indolic N1 atom.

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Year:  2015        PMID: 26204056     DOI: 10.1021/acs.biochem.5b00764

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  14 in total

1.  Mechanistic Studies on Tryptophan Lyase (NosL): Identification of Cyanide as a Reaction Product.

Authors:  Dhananjay M Bhandari; Dmytro Fedoseyenko; Tadhg P Begley
Journal:  J Am Chem Soc       Date:  2018-01-02       Impact factor: 15.419

2.  Efficient methylation of C2 in l-tryptophan by the cobalamin-dependent radical S-adenosylmethionine methylase TsrM requires an unmodified N1 amine.

Authors:  Anthony J Blaszczyk; Bo Wang; Alexey Silakov; Jackson V Ho; Squire J Booker
Journal:  J Biol Chem       Date:  2017-07-26       Impact factor: 5.157

Review 3.  New Insights into the Biosynthetic Logic of Ribosomally Synthesized and Post-translationally Modified Peptide Natural Products.

Authors:  Manuel A Ortega; Wilfred A van der Donk
Journal:  Cell Chem Biol       Date:  2016-01-21       Impact factor: 8.116

Review 4.  Radical S-Adenosylmethionine Enzymes Involved in RiPP Biosynthesis.

Authors:  Nilkamal Mahanta; Graham A Hudson; Douglas A Mitchell
Journal:  Biochemistry       Date:  2017-09-22       Impact factor: 3.162

Review 5.  Following the electrons: peculiarities in the catalytic cycles of radical SAM enzymes.

Authors:  Mark W Ruszczycky; Aoshu Zhong; Hung-Wen Liu
Journal:  Nat Prod Rep       Date:  2018-07-18       Impact factor: 13.423

Review 6.  C-C bond forming radical SAM enzymes involved in the construction of carbon skeletons of cofactors and natural products.

Authors:  Kenichi Yokoyama; Edward A Lilla
Journal:  Nat Prod Rep       Date:  2018-07-18       Impact factor: 13.423

Review 7.  New developments in RiPP discovery, enzymology and engineering.

Authors:  Manuel Montalbán-López; Thomas A Scott; Sangeetha Ramesh; Imran R Rahman; Auke J van Heel; Jakob H Viel; Vahe Bandarian; Elke Dittmann; Olga Genilloud; Yuki Goto; María José Grande Burgos; Colin Hill; Seokhee Kim; Jesko Koehnke; John A Latham; A James Link; Beatriz Martínez; Satish K Nair; Yvain Nicolet; Sylvie Rebuffat; Hans-Georg Sahl; Dipti Sareen; Eric W Schmidt; Lutz Schmitt; Konstantin Severinov; Roderich D Süssmuth; Andrew W Truman; Huan Wang; Jing-Ke Weng; Gilles P van Wezel; Qi Zhang; Jin Zhong; Jörn Piel; Douglas A Mitchell; Oscar P Kuipers; Wilfred A van der Donk
Journal:  Nat Prod Rep       Date:  2020-09-16       Impact factor: 15.111

8.  Biosynthesis of the nosiheptide indole side ring centers on a cryptic carrier protein NosJ.

Authors:  Wei Ding; Wenjuan Ji; Yujie Wu; Runze Wu; Wan-Qiu Liu; Tianlu Mo; Junfeng Zhao; Xiaoyan Ma; Wei Zhang; Ping Xu; Zixin Deng; Boping Tang; Yi Yu; Qi Zhang
Journal:  Nat Commun       Date:  2017-09-05       Impact factor: 14.919

9.  7-Carboxy-7-deazaguanine Synthase: A Radical S-Adenosyl-l-methionine Enzyme with Polar Tendencies.

Authors:  Nathan A Bruender; Tsehai A J Grell; Daniel P Dowling; Reid M McCarty; Catherine L Drennan; Vahe Bandarian
Journal:  J Am Chem Soc       Date:  2017-01-25       Impact factor: 15.419

Review 10.  Catalytic Promiscuity of the Radical S-adenosyl-L-methionine Enzyme NosL.

Authors:  Wei Ding; Xinjian Ji; Yongzhen Li; Qi Zhang
Journal:  Front Chem       Date:  2016-06-22       Impact factor: 5.221

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