Literature DB >> 30272656

Light-sheet Fluorescence Microscopy for the Study of the Murine Heart.

Yichen Ding1, Zachary Bailey2, Victoria Messerschmidt2, Jun Nie3, Richard Bryant2, Sandra Rugonyi4, Peng Fei3, Juhyun Lee5, Tzung K Hsiai6.   

Abstract

Light-sheet fluorescence microscopy has been widely used for rapid image acquisition with a high axial resolution from micrometer to millimeter scale. Traditional light-sheet techniques involve the use of a single illumination beam directed orthogonally at sample tissue. Images of large samples that are produced using a single illumination beam contain stripes or artifacts and suffer from a reduced resolution due to the scattering and absorption of light by the tissue. This study uses a dual-sided illumination beam and a simplified CLARITY optical clearing technique for the murine heart. These techniques allow for deeper imaging by removing lipids from the heart and produce a large field of imaging, greater than 10 x 10 x 10 mm3. As a result, this strategy enables us to quantify the ventricular dimensions, track the cardiac lineage, and localize the spatial distribution of cardiac-specific proteins and ion-channels from the post-natal to adult mouse hearts with sufficient contrast and resolution.

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Year:  2018        PMID: 30272656      PMCID: PMC6235202          DOI: 10.3791/57769

Source DB:  PubMed          Journal:  J Vis Exp        ISSN: 1940-087X            Impact factor:   1.355


  15 in total

1.  Optical sectioning deep inside live embryos by selective plane illumination microscopy.

Authors:  Jan Huisken; Jim Swoger; Filippo Del Bene; Joachim Wittbrodt; Ernst H K Stelzer
Journal:  Science       Date:  2004-08-13       Impact factor: 47.728

2.  A versatile adeno-associated virus vector producer cell line method for scalable vector production of different serotypes.

Authors:  Zhenhua Yuan; Chunping Qiao; Peiqi Hu; Juan Li; Xiao Xiao
Journal:  Hum Gene Ther       Date:  2011-03-18       Impact factor: 5.695

Review 3.  Selective plane illumination microscopy techniques in developmental biology.

Authors:  Jan Huisken; Didier Y R Stainier
Journal:  Development       Date:  2009-06       Impact factor: 6.868

4.  Deep and fast live imaging with two-photon scanned light-sheet microscopy.

Authors:  Thai V Truong; Willy Supatto; David S Koos; John M Choi; Scott E Fraser
Journal:  Nat Methods       Date:  2011-07-17       Impact factor: 28.547

5.  Integrating light-sheet imaging with virtual reality to recapitulate developmental cardiac mechanics.

Authors:  Yichen Ding; Arash Abiri; Parinaz Abiri; Shuoran Li; Chih-Chiang Chang; Kyung In Baek; Jeffrey J Hsu; Elias Sideris; Yilei Li; Juhyun Lee; Tatiana Segura; Thao P Nguyen; Alexander Bui; René R Sevag Packard; Peng Fei; Tzung K Hsiai
Journal:  JCI Insight       Date:  2017-11-16

Review 6.  Clarifying Tissue Clearing.

Authors:  Douglas S Richardson; Jeff W Lichtman
Journal:  Cell       Date:  2015-07-16       Impact factor: 41.582

7.  Isolation and excision of murine aorta; a versatile technique in the study of cardiovascular disease.

Authors:  Nathan Robbins; Allie Thompson; Adrien Mann; Andra L Blomkalns
Journal:  J Vis Exp       Date:  2014-11-24       Impact factor: 1.355

8.  Light-sheet fluorescence imaging to localize cardiac lineage and protein distribution.

Authors:  Yichen Ding; Juhyun Lee; Jianguo Ma; Kevin Sung; Tomohiro Yokota; Neha Singh; Mojdeh Dooraghi; Parinaz Abiri; Yibin Wang; Rajan P Kulkarni; Atsushi Nakano; Thao P Nguyen; Peng Fei; Tzung K Hsiai
Journal:  Sci Rep       Date:  2017-02-06       Impact factor: 4.379

9.  Noninvasive imaging beyond the diffraction limit of 3D dynamics in thickly fluorescent specimens.

Authors:  Liang Gao; Lin Shao; Christopher D Higgins; John S Poulton; Mark Peifer; Michael W Davidson; Xufeng Wu; Bob Goldstein; Eric Betzig
Journal:  Cell       Date:  2012-12-07       Impact factor: 41.582

10.  Simplified three-dimensional tissue clearing and incorporation of colorimetric phenotyping.

Authors:  Kevin Sung; Yichen Ding; Jianguo Ma; Harrison Chen; Vincent Huang; Michelle Cheng; Cindy F Yang; Jocelyn T Kim; Daniel Eguchi; Dino Di Carlo; Tzung K Hsiai; Atsushi Nakano; Rajan P Kulkarni
Journal:  Sci Rep       Date:  2016-08-08       Impact factor: 4.379

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  5 in total

1.  Saak Transform-Based Machine Learning for Light-Sheet Imaging of Cardiac Trabeculation.

Authors:  Yichen Ding; Varun Gudapati; Ruiyuan Lin; Yanan Fei; Rene R Sevag Packard; Sibo Song; Chih-Chiang Chang; Kyung In Baek; Zhaoqiang Wang; Mehrdad Roustaei; Dengfeng Kuang; C-C Jay Kuo; Tzung K Hsiai
Journal:  IEEE Trans Biomed Eng       Date:  2020-12-21       Impact factor: 4.538

2.  Three-Dimensional Imaging Provides Detailed Atherosclerotic Plaque Morphology and Reveals Angiogenesis After Carotid Artery Ligation.

Authors:  Tobias Becher; Dario F Riascos-Bernal; Daniel J Kramer; Vanessa M Almonte; Jingy Chi; Tao Tong; Gustavo H Oliveira-Paula; Issam Koleilat; Wei Chen; Paul Cohen; Nicholas E S Sibinga
Journal:  Circ Res       Date:  2020-01-09       Impact factor: 17.367

3.  A simple optical tissue clearing pipeline for 3D vasculature imaging of the mediastinal organs in mice.

Authors:  Quanchao Sun; Picascia Tiziana; Arif Ul Maula Khan; Vincent Heuveline; Norbert Gretz
Journal:  Int J Exp Pathol       Date:  2021-10-06       Impact factor: 2.793

4.  A Comprehensive Integrated Anatomical and Molecular Atlas of Rat Intrinsic Cardiac Nervous System.

Authors:  Sirisha Achanta; Jonathan Gorky; Clara Leung; Alison Moss; Shaina Robbins; Leonard Eisenman; Jin Chen; Susan Tappan; Maci Heal; Navid Farahani; Todd Huffman; Steve England; Zixi Jack Cheng; Rajanikanth Vadigepalli; James S Schwaber
Journal:  iScience       Date:  2020-05-26

5.  3D single cell scale anatomical map of sex-dependent variability of the rat intrinsic cardiac nervous system.

Authors:  Clara Leung; Shaina Robbins; Alison Moss; Maci Heal; Mahyar Osanlouy; Richard Christie; Navid Farahani; Corey Monteith; Jin Chen; Peter Hunter; Susan Tappan; Rajanikanth Vadigepalli; Zixi Jack Cheng; James S Schwaber
Journal:  iScience       Date:  2021-07-19
  5 in total

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