Literature DB >> 31435688

Phylogeny and Evolution of RNA 3'-Nucleotidyltransferases in Bacteria.

George H Jones1.   

Abstract

The tRNA nucleotidyltransferases and poly(A) polymerases belong to a superfamily of nucleotidyltransferases. The amino acid sequences of a number of bacterial tRNA nucleotidyltransferases and poly(A) polymerases have been used to construct a rooted, neighbor-joining phylogenetic tree. Using information gleaned from that analysis, along with data from the rRNA-based phylogenetic tree, structural data available on a number of members of the superfamily and other biochemical information on the superfamily, it is possible to suggest a scheme for the evolution of the bacterial tRNA nucleotidyltransferases and poly(A) polymerases from ancestral species. Elements of that scheme are discussed along with questions arising from the scheme which can be explored experimentally.

Keywords:  Alien index; CCA end; Horizontal gene transfer; Nucleotidyltransferase; Phylogeny; Poly(A) polymerase; Polynucleotide phosphorylase; tRNA

Mesh:

Substances:

Year:  2019        PMID: 31435688     DOI: 10.1007/s00239-019-09907-2

Source DB:  PubMed          Journal:  J Mol Evol        ISSN: 0022-2844            Impact factor:   2.395


  60 in total

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Review 2.  Mutational equilibrium model of genome size evolution.

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Review 4.  Ancient horizontal gene transfer.

Authors:  James R Brown
Journal:  Nat Rev Genet       Date:  2003-02       Impact factor: 53.242

5.  Polynucleotide phosphorylase functions as both an exonuclease and a poly(A) polymerase in spinach chloroplasts.

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6.  Closely related CC- and A-adding enzymes collaborate to construct and repair the 3'-terminal CCA of tRNA in Synechocystis sp. and Deinococcus radiodurans.

Authors:  Kozo Tomita; Alan M Weiner
Journal:  J Biol Chem       Date:  2002-10-04       Impact factor: 5.157

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Authors:  K Tomita; A M Weiner
Journal:  Science       Date:  2001-11-09       Impact factor: 47.728

8.  Polynucleotide phosphorylase functions both as a 3' right-arrow 5' exonuclease and a poly(A) polymerase in Escherichia coli.

Authors:  B K Mohanty; S R Kushner
Journal:  Proc Natl Acad Sci U S A       Date:  2000-10-24       Impact factor: 11.205

9.  RNA polyadenylation and degradation in cyanobacteria are similar to the chloroplast but different from Escherichia coli.

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10.  Identification of the gene for an Escherichia coli poly(A) polymerase.

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Journal:  Proc Natl Acad Sci U S A       Date:  1992-11-01       Impact factor: 11.205

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  2 in total

1.  Divergent Evolution of Eukaryotic CC- and A-Adding Enzymes.

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2.  CCA-Addition Gone Wild: Unusual Occurrence and Phylogeny of Four Different tRNA Nucleotidyltransferases in Acanthamoeba castellanii.

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