Literature DB >> 26178142

Probing Invisible, Excited Protein States by Non-Uniformly Sampled Pseudo-4D CEST Spectroscopy.

Dong Long1, Frank Delaglio2, Ashok Sekhar3, Lewis E Kay4,5.   

Abstract

Chemical exchange saturation transfer (CEST) NMR spectroscopy is a powerful tool for studies of slow timescale protein dynamics. Typical experiments are based on recording a large number of 2D data sets and quantifying peak intensities in each of the resulting planes. A weakness of the method is that peaks must be resolved in 2D spectra, limiting applications to relatively small proteins. Resolution is significantly improved in 3D spectra but recording uniformly sampled data is time-prohibitive. Here we describe non-uniformly sampled HNCO-based pseudo-4D CEST that provides excellent resolution in reasonable measurement times. Data analysis is done through fitting in the time domain, without the need of reconstructing the frequency dimensions, exploiting previously measured accurate peak positions in reference spectra. The methodology is demonstrated on several protein systems, including a nascent form of superoxide dismutase that is implicated in neurodegenerative disease.
© 2015 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  CEST; conformational dynamics; non-uniform sampling; proteins; pseudo-4D NMR spectroscopy

Mesh:

Substances:

Year:  2015        PMID: 26178142     DOI: 10.1002/anie.201504070

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN: 1433-7851            Impact factor:   15.336


  12 in total

1.  Non-uniform sampling of NMR relaxation data.

Authors:  Troels E Linnet; Kaare Teilum
Journal:  J Biomol NMR       Date:  2016-02-04       Impact factor: 2.835

2.  Accurate determination of rates from non-uniformly sampled relaxation data.

Authors:  Matthew A Stetz; A Joshua Wand
Journal:  J Biomol NMR       Date:  2016-07-08       Impact factor: 2.835

3.  Multiple frequency saturation pulses reduce CEST acquisition time for quantifying conformational exchange in biomolecules.

Authors:  Maureen Leninger; William M Marsiglia; Alexej Jerschow; Nathaniel J Traaseth
Journal:  J Biomol NMR       Date:  2018-05-23       Impact factor: 2.835

4.  Probing the excited-state chemical shifts and exchange parameters by nitrogen-decoupled amide proton chemical exchange saturation transfer (HNdec-CEST).

Authors:  Qinglin Wu; Benjamin A Fenton; Jessica L Wojtaszek; Pei Zhou
Journal:  Chem Commun (Camb)       Date:  2017-07-27       Impact factor: 6.222

Review 5.  Probing conformational dynamics in biomolecules via chemical exchange saturation transfer: a primer.

Authors:  Pramodh Vallurupalli; Ashok Sekhar; Tairan Yuwen; Lewis E Kay
Journal:  J Biomol NMR       Date:  2017-03-19       Impact factor: 2.835

6.  Extreme Nonuniform Sampling for Protein NMR Dynamics Studies in Minimal Time.

Authors:  Gregory Jameson; Alexandar L Hansen; Dawei Li; Lei Bruschweiler-Li; Rafael Brüschweiler
Journal:  J Am Chem Soc       Date:  2019-10-14       Impact factor: 15.419

7.  Accelerating 2D NMR relaxation dispersion experiments using iterated maps.

Authors:  Jared Rovny; Robert L Blum; J Patrick Loria; Sean E Barrett
Journal:  J Biomol NMR       Date:  2019-07-06       Impact factor: 2.835

8.  Characterization of Internal Protein Dynamics and Conformational Entropy by NMR Relaxation.

Authors:  Matthew A Stetz; José A Caro; Sravya Kotaru; Xuejun Yao; Bryan S Marques; Kathleen G Valentine; A Joshua Wand
Journal:  Methods Enzymol       Date:  2018-12-08       Impact factor: 1.600

9.  Enhanced Nuclear Magnetic Resonance Spectroscopy with Isotropic Mixing as a Pseudodimension.

Authors:  Dariusz Gołowicz; Alexandra Shchukina; Krzysztof Kazimierczuk
Journal:  Anal Chem       Date:  2022-06-13       Impact factor: 8.008

10.  Protein Dynamics revealed by NMR Relaxation Methods.

Authors:  Fa-An Chao; R Andrew Byrd
Journal:  Emerg Top Life Sci       Date:  2020-04-18
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