Literature DB >> 28246181

Synthetic Botany.

Christian R Boehm1, Bernardo Pollak1, Nuri Purswani2, Nicola Patron3, Jim Haseloff1.   

Abstract

Plants are attractive platforms for synthetic biology and metabolic engineering. Plants' modular and plastic body plans, capacity for photosynthesis, extensive secondary metabolism, and agronomic systems for large-scale production make them ideal targets for genetic reprogramming. However, efforts in this area have been constrained by slow growth, long life cycles, the requirement for specialized facilities, a paucity of efficient tools for genetic manipulation, and the complexity of multicellularity. There is a need for better experimental and theoretical frameworks to understand the way genetic networks, cellular populations, and tissue-wide physical processes interact at different scales. We highlight new approaches to the DNA-based manipulation of plants and the use of advanced quantitative imaging techniques in simple plant models such as Marchantia polymorpha. These offer the prospects of improved understanding of plant dynamics and new approaches to rational engineering of plant traits.
Copyright © 2017 Cold Spring Harbor Laboratory Press; all rights reserved.

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Mesh:

Year:  2017        PMID: 28246181      PMCID: PMC5495061          DOI: 10.1101/cshperspect.a023887

Source DB:  PubMed          Journal:  Cold Spring Harb Perspect Biol        ISSN: 1943-0264            Impact factor:   10.005


  156 in total

1.  Overexpression of the Bt cry2Aa2 operon in chloroplasts leads to formation of insecticidal crystals.

Authors:  B De Cosa; W Moar; S B Lee; M Miller; H Daniell
Journal:  Nat Biotechnol       Date:  2001-01       Impact factor: 54.908

2.  A recombinase-mediated transcriptional induction system in transgenic plants.

Authors:  T Hoff; K M Schnorr; J Mundy
Journal:  Plant Mol Biol       Date:  2001-01       Impact factor: 4.076

3.  Technical advance: An estrogen receptor-based transactivator XVE mediates highly inducible gene expression in transgenic plants.

Authors:  J Zuo; Q W Niu; N H Chua
Journal:  Plant J       Date:  2000-10       Impact factor: 6.417

Review 4.  Gene traps: tools for plant development and genomics.

Authors:  P S Springer
Journal:  Plant Cell       Date:  2000-07       Impact factor: 11.277

5.  Engineering the provitamin A (beta-carotene) biosynthetic pathway into (carotenoid-free) rice endosperm.

Authors:  X Ye; S Al-Babili; A Klöti; J Zhang; P Lucca; P Beyer; I Potrykus
Journal:  Science       Date:  2000-01-14       Impact factor: 47.728

6.  Expression profiling of the maize flavonoid pathway genes controlled by estradiol-inducible transcription factors CRC and P.

Authors:  W Bruce; O Folkerts; C Garnaat; O Crasta; B Roth; B Bowen
Journal:  Plant Cell       Date:  2000-01       Impact factor: 11.277

7.  Construction of male and female PAC genomic libraries suitable for identification of Y-chromosome-specific clones from the liverwort, Marchantia polymorpha.

Authors:  S Okada; M Fujisawa; T Sone; S Nakayama; R Nishiyama; M Takenaka; S Yamaoka; M Sakaida; K Kono; M Takahama; K T Yamato; H Fukuzawa; A Brennicke; K Ohyama
Journal:  Plant J       Date:  2000-11       Impact factor: 6.417

8.  Ecdysone agonist inducible transcription in transgenic tobacco plants.

Authors:  A Martinez; C Sparks; C A Hart; J Thompson; I Jepson
Journal:  Plant J       Date:  1999-07       Impact factor: 6.417

9.  Cellular localization of isoprenoid biosynthetic enzymes in Marchantia polymorpha. Uncovering a new role of oil bodies.

Authors:  C Suire; F Bouvier; R A Backhaus; D Bégu; M Bonneu; B Camara
Journal:  Plant Physiol       Date:  2000-11       Impact factor: 8.340

10.  Direct transformation and plant regeneration of the haploid liverwort Marchantia polymorpha L.

Authors:  M Takenaka; S Yamaoka; T Hanajiri; Y Shimizu-Ueda; K T Yamato; H Fukuzawa; K Ohyama
Journal:  Transgenic Res       Date:  2000-06       Impact factor: 2.788

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  11 in total

Review 1.  The Synthetic Biology Toolkit for Photosynthetic Microorganisms.

Authors:  Konstantinos Vavitsas; Pierre Crozet; Marcos Hamborg Vinde; Fiona Davies; Stéphane D Lemaire; Claudia E Vickers
Journal:  Plant Physiol       Date:  2019-07-01       Impact factor: 8.340

Review 2.  Engineering Strategies to Boost Crop Productivity by Cutting Respiratory Carbon Loss.

Authors:  Jeffrey S Amthor; Arren Bar-Even; Andrew D Hanson; A Harvey Millar; Mark Stitt; Lee J Sweetlove; Stephen D Tyerman
Journal:  Plant Cell       Date:  2019-01-22       Impact factor: 11.277

3.  Using positional information to provide context for biological image analysis with MorphoGraphX 2.0.

Authors:  Sören Strauss; Adam Runions; Brendan Lane; Dennis Eschweiler; Namrata Bajpai; Nicola Trozzi; Anne-Lise Routier-Kierzkowska; Saiko Yoshida; Sylvia Rodrigues da Silveira; Athul Vijayan; Rachele Tofanelli; Mateusz Majda; Emillie Echevin; Constance Le Gloanec; Hana Bertrand-Rakusova; Milad Adibi; Kay Schneitz; George W Bassel; Daniel Kierzkowski; Johannes Stegmaier; Miltos Tsiantis; Richard S Smith
Journal:  Elife       Date:  2022-05-05       Impact factor: 8.713

4.  Co-expression and Transcriptome Analysis of Marchantia polymorpha Transcription Factors Supports Class C ARFs as Independent Actors of an Ancient Auxin Regulatory Module.

Authors:  Eduardo Flores-Sandoval; Facundo Romani; John L Bowman
Journal:  Front Plant Sci       Date:  2018-10-01       Impact factor: 5.753

5.  Construction of DNA Tools for Hyperexpression in Marchantia Chloroplasts.

Authors:  Eftychios Frangedakis; Fernando Guzman-Chavez; Marius Rebmann; Kasey Markel; Ying Yu; Artemis Perraki; Sze Wai Tse; Yang Liu; Jenna Rever; Susanna Sauret-Gueto; Bernard Goffinet; Harald Schneider; Jim Haseloff
Journal:  ACS Synth Biol       Date:  2021-06-07       Impact factor: 5.110

Review 6.  Network-based approaches to quantify multicellular development.

Authors:  Matthew D B Jackson; Salva Duran-Nebreda; George W Bassel
Journal:  J R Soc Interface       Date:  2017-10-11       Impact factor: 4.118

7.  Droplet-based microfluidic analysis and screening of single plant cells.

Authors:  Ziyi Yu; Christian R Boehm; Julian M Hibberd; Chris Abell; Jim Haseloff; Steven J Burgess; Ivan Reyna-Llorens
Journal:  PLoS One       Date:  2018-05-03       Impact factor: 3.240

Review 8.  Engineering pattern formation and morphogenesis.

Authors:  Jamie A Davies; Fokion Glykofrydis
Journal:  Biochem Soc Trans       Date:  2020-06-30       Impact factor: 5.407

9.  The Multiplanetary Future of Plant Synthetic Biology.

Authors:  Briardo Llorente; Thomas C Williams; Hugh D Goold
Journal:  Genes (Basel)       Date:  2018-07-10       Impact factor: 4.096

Review 10.  Beyond natural: synthetic expansions of botanical form and function.

Authors:  Nicola J Patron
Journal:  New Phytol       Date:  2020-04-23       Impact factor: 10.323

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