Literature DB >> 26132533

Human Pluripotent Stem Cell Based Developmental Toxicity Assays for Chemical Safety Screening and Systems Biology Data Generation.

Vaibhav Shinde1, Stefanie Klima2, Perumal Srinivasan Sureshkumar1, Kesavan Meganathan1, Smita Jagtap1, Eugen Rempel3, Jörg Rahnenführer3, Jan Georg Hengstler4, Tanja Waldmann2, Jürgen Hescheler1, Marcel Leist2, Agapios Sachinidis5.   

Abstract

Efficient protocols to differentiate human pluripotent stem cells to various tissues in combination with -omics technologies opened up new horizons for in vitro toxicity testing of potential drugs. To provide a solid scientific basis for such assays, it will be important to gain quantitative information on the time course of development and on the underlying regulatory mechanisms by systems biology approaches. Two assays have therefore been tuned here for these requirements. In the UKK test system, human embryonic stem cells (hESC) (or other pluripotent cells) are left to spontaneously differentiate for 14 days in embryoid bodies, to allow generation of cells of all three germ layers. This system recapitulates key steps of early human embryonic development, and it can predict human-specific early embryonic toxicity/teratogenicity, if cells are exposed to chemicals during differentiation. The UKN1 test system is based on hESC differentiating to a population of neuroectodermal progenitor (NEP) cells for 6 days. This system recapitulates early neural development and predicts early developmental neurotoxicity and epigenetic changes triggered by chemicals. Both systems, in combination with transcriptome microarray studies, are suitable for identifying toxicity biomarkers. Moreover, they may be used in combination to generate input data for systems biology analysis. These test systems have advantages over the traditional toxicological studies requiring large amounts of animals. The test systems may contribute to a reduction of the costs for drug development and chemical safety evaluation. Their combination sheds light especially on compounds that may influence neurodevelopment specifically.

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Year:  2015        PMID: 26132533      PMCID: PMC4544843          DOI: 10.3791/52333

Source DB:  PubMed          Journal:  J Vis Exp        ISSN: 1940-087X            Impact factor:   1.355


  33 in total

1.  Epigenetic changes and disturbed neural development in a human embryonic stem cell-based model relating to the fetal valproate syndrome.

Authors:  Nina V Balmer; Matthias K Weng; Bastian Zimmer; Violeta N Ivanova; Stuart M Chambers; Elena Nikolaeva; Smita Jagtap; Agapios Sachinidis; Jürgen Hescheler; Tanja Waldmann; Marcel Leist
Journal:  Hum Mol Genet       Date:  2012-06-20       Impact factor: 6.150

Review 2.  Developmental neurotoxicity - challenges in the 21st century and in vitro opportunities.

Authors:  Lena Smirnova; Helena T Hogberg; Marcel Leist; Thomas Hartung
Journal:  ALTEX       Date:  2014       Impact factor: 6.043

3.  Growth and differentiation of embryoid bodies derived from human embryonic stem cells: effect of glucose and basic fibroblast growth factor.

Authors:  Melissa L M Khoo; Leon R McQuade; Murray S R Smith; Justin G Lees; Kuldip S Sidhu; Bernard E Tuch
Journal:  Biol Reprod       Date:  2005-08-03       Impact factor: 4.285

4.  Directing human embryonic stem cell differentiation towards a renal lineage generates a self-organizing kidney.

Authors:  M Takasato; P X Er; M Becroft; J M Vanslambrouck; E G Stanley; A G Elefanty; M H Little
Journal:  Nat Cell Biol       Date:  2013-12-15       Impact factor: 28.824

5.  Spheroid culture for enhanced differentiation of human embryonic stem cells to hepatocyte-like cells.

Authors:  Kartik Subramanian; Derek Jason Owens; Ravali Raju; Meri Firpo; Timothy D O'Brien; Catherine M Verfaillie; Wei-Shou Hu
Journal:  Stem Cells Dev       Date:  2013-10-22       Impact factor: 3.272

6.  Test systems of developmental toxicity: state-of-the art and future perspectives.

Authors:  Marcel Leist; Annette Ringwald; Raivo Kolde; Susanne Bremer; Christoph van Thriel; Karl-Heinz Krause; Jörg Rahnenführer; Agapios Sachinidis; Jürgen Hescheler; Jan G Hengstler
Journal:  Arch Toxicol       Date:  2013-12       Impact factor: 5.153

7.  Hepatic differentiation and maturation of human embryonic stem cells cultured in a perfused three-dimensional bioreactor.

Authors:  Louise Sivertsson; Jane Synnergren; Janne Jensen; Petter Björquist; Magnus Ingelman-Sundberg
Journal:  Stem Cells Dev       Date:  2012-11-02       Impact factor: 3.272

8.  Human embryonic stem cell-derived test systems for developmental neurotoxicity: a transcriptomics approach.

Authors:  Anne K Krug; Raivo Kolde; John A Gaspar; Eugen Rempel; Nina V Balmer; Kesavan Meganathan; Kinga Vojnits; Mathurin Baquié; Tanja Waldmann; Roberto Ensenat-Waser; Smita Jagtap; Richard M Evans; Stephanie Julien; Hedi Peterson; Dimitra Zagoura; Suzanne Kadereit; Daniel Gerhard; Isaia Sotiriadou; Michael Heke; Karthick Natarajan; Margit Henry; Johannes Winkler; Rosemarie Marchan; Luc Stoppini; Sieto Bosgra; Joost Westerhout; Miriam Verwei; Jaak Vilo; Andreas Kortenkamp; Jürgen Hescheler; Ludwig Hothorn; Susanne Bremer; Christoph van Thriel; Karl-Heinz Krause; Jan G Hengstler; Jörg Rahnenführer; Marcel Leist; Agapios Sachinidis
Journal:  Arch Toxicol       Date:  2012-11-21       Impact factor: 5.153

9.  Physical passaging of embryoid bodies generated from human pluripotent stem cells.

Authors:  Mi-Young Son; Hyun-Jin Kim; Min-Jeong Kim; Yee Sook Cho
Journal:  PLoS One       Date:  2011-05-03       Impact factor: 3.240

10.  Identification of thalidomide-specific transcriptomics and proteomics signatures during differentiation of human embryonic stem cells.

Authors:  Kesavan Meganathan; Smita Jagtap; Vilas Wagh; Johannes Winkler; John Antonydas Gaspar; Diana Hildebrand; Maria Trusch; Karola Lehmann; Jürgen Hescheler; Hartmut Schlüter; Agapios Sachinidis
Journal:  PLoS One       Date:  2012-08-28       Impact factor: 3.240

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  16 in total

1.  Pluripotent stem cell assays: Modalities and applications for predictive developmental toxicity.

Authors:  Aldert H Piersma; Nancy C Baker; George P Daston; Burkhard Flick; Michio Fujiwara; Thomas B Knudsen; Horst Spielmann; Noriyuki Suzuki; Katya Tsaioun; Hajime Kojima
Journal:  Curr Res Toxicol       Date:  2022-05-13

Review 2.  Pluripotent Stem Cells in Developmental Toxicity Testing: A Review of Methodological Advances.

Authors:  Anthony L Luz; Erik J Tokar
Journal:  Toxicol Sci       Date:  2018-09-01       Impact factor: 4.849

3.  Optimization of the TeraTox Assay for Preclinical Teratogenicity Assessment.

Authors:  Manuela Jaklin; Jitao David Zhang; Nicole Schäfer; Nicole Clemann; Paul Barrow; Erich Küng; Lisa Sach-Peltason; Claudia McGinnis; Marcel Leist; Stefan Kustermann
Journal:  Toxicol Sci       Date:  2022-06-28       Impact factor: 4.109

4.  A transcriptome-based classifier to identify developmental toxicants by stem cell testing: design, validation and optimization for histone deacetylase inhibitors.

Authors:  Eugen Rempel; Lisa Hoelting; Tanja Waldmann; Nina V Balmer; Stefan Schildknecht; Marianna Grinberg; John Antony Das Gaspar; Vaibhav Shinde; Regina Stöber; Rosemarie Marchan; Christoph van Thriel; Julia Liebing; Johannes Meisig; Nils Blüthgen; Agapios Sachinidis; Jörg Rahnenführer; Jan G Hengstler; Marcel Leist
Journal:  Arch Toxicol       Date:  2015-08-14       Impact factor: 5.153

5.  Highlight report: New methods for quantification of bile canalicular dynamics.

Authors:  Ahmed Ghallab
Journal:  EXCLI J       Date:  2015-12-21       Impact factor: 4.068

6.  Drug-induced mitochondrial impairment in liver cells.

Authors:  Regina Stöber
Journal:  EXCLI J       Date:  2015-12-22       Impact factor: 4.068

7.  Comparison of a teratogenic transcriptome-based predictive test based on human embryonic versus inducible pluripotent stem cells.

Authors:  Vaibhav Shinde; Sureshkumar Perumal Srinivasan; Margit Henry; Tamara Rotshteyn; Jürgen Hescheler; Jörg Rahnenführer; Marianna Grinberg; Johannes Meisig; Nils Blüthgen; Tanja Waldmann; Marcel Leist; Jan Georg Hengstler; Agapios Sachinidis
Journal:  Stem Cell Res Ther       Date:  2016-12-30       Impact factor: 6.832

8.  Identification of RNA biomarkers for chemical safety screening in mouse embryonic stem cells using RNA deep sequencing analysis.

Authors:  Hidenori Tani; Jun-Ichi Takeshita; Hiroshi Aoki; Kaoru Nakamura; Ryosuke Abe; Akinobu Toyoda; Yasunori Endo; Sadaaki Miyamoto; Masashi Gamo; Hiroaki Sato; Masaki Torimura
Journal:  PLoS One       Date:  2017-07-27       Impact factor: 3.240

9.  Highlight report: Cardiotoxicity screening.

Authors:  Agapios Sachinidis
Journal:  EXCLI J       Date:  2016-02-22       Impact factor: 4.068

10.  Definition of transcriptome-based indices for quantitative characterization of chemically disturbed stem cell development: introduction of the STOP-Toxukn and STOP-Toxukk tests.

Authors:  Vaibhav Shinde; Lisa Hoelting; Sureshkumar Perumal Srinivasan; Johannes Meisig; Kesavan Meganathan; Smita Jagtap; Marianna Grinberg; Julia Liebing; Nils Bluethgen; Jörg Rahnenführer; Eugen Rempel; Regina Stoeber; Stefan Schildknecht; Sunniva Förster; Patricio Godoy; Christoph van Thriel; John Antonydas Gaspar; Jürgen Hescheler; Tanja Waldmann; Jan G Hengstler; Marcel Leist; Agapios Sachinidis
Journal:  Arch Toxicol       Date:  2016-05-17       Impact factor: 5.153

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