Literature DB >> 26126286

Automated, Depth-Resolved Estimation of the Attenuation Coefficient From Optical Coherence Tomography Data.

Gennifer T Smith, Nicholas Dwork, Daniel O'Connor, Uzair Sikora, Kristen L Lurie, John M Pauly, Audrey K Ellerbee.   

Abstract

We present a method for automated, depth-resolved extraction of the attenuation coefficient from Optical Coherence Tomography (OCT) data. In contrast to previous automated, depth-resolved methods, the Depth-Resolved Confocal (DRC) technique derives an invertible mapping between the measured OCT intensity data and the attenuation coefficient while considering the confocal function and sensitivity fall-off, which are critical to ensure accurate measurements of the attenuation coefficient in practical settings (e.g., clinical endoscopy). We also show that further improvement of the estimated attenuation coefficient is possible by formulating image denoising as a convex optimization problem that we term Intensity Weighted Horizontal Total Variation (iwhTV). The performance and accuracy of DRC alone and DRC+iwhTV are validated with simulated data, optical phantoms, and ex-vivo porcine tissue. Our results suggest that implementation of DRC+iwhTV represents a novel way to improve OCT contrast for better tissue characterization through quantitative imaging.

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Mesh:

Year:  2015        PMID: 26126286      PMCID: PMC4714956          DOI: 10.1109/TMI.2015.2450197

Source DB:  PubMed          Journal:  IEEE Trans Med Imaging        ISSN: 0278-0062            Impact factor:   10.048


  23 in total

1.  The effect of glaucoma on the optical attenuation coefficient of the retinal nerve fiber layer in spectral domain optical coherence tomography images.

Authors:  Josine van der Schoot; Koenraad A Vermeer; Johannes F de Boer; Hans G Lemij
Journal:  Invest Ophthalmol Vis Sci       Date:  2012-04-30       Impact factor: 4.799

2.  The effects of reduced bit depth on optical coherence tomography phase data.

Authors:  William A Ling; Audrey K Ellerbee
Journal:  Opt Express       Date:  2012-07-02       Impact factor: 3.894

3.  Tissue-mimicking bladder wall phantoms for evaluating acoustic radiation force-optical coherence elastography systems.

Authors:  O'tega A Ejofodomi; Vesna Zderic; Jason M Zara
Journal:  Med Phys       Date:  2010-04       Impact factor: 4.071

4.  Localized measurement of optical attenuation coefficients of atherosclerotic plaque constituents by quantitative optical coherence tomography.

Authors:  Freek J van der Meer; Dirk J Faber; David M Baraznji Sassoon; Maurice C Aalders; Gerard Pasterkamp; Ton G van Leeuwen
Journal:  IEEE Trans Med Imaging       Date:  2005-10       Impact factor: 10.048

5.  Quantitative measurement of attenuation coefficients of weakly scattering media using optical coherence tomography.

Authors:  Dirk Faber; Freek van der Meer; Maurice Aalders; Ton van Leeuwen
Journal:  Opt Express       Date:  2004-09-20       Impact factor: 3.894

6.  Quantitative measurement of optical attenuation coefficients of cell lines CNE1, CNE2, and NP69 using optical coherence tomography.

Authors:  Jianghua Li; Ziwei Tu; Zhiyuan Shen; Yunfei Xia; Yonghong He; Songhao Liu; Changshui Chen
Journal:  Lasers Med Sci       Date:  2012-05-22       Impact factor: 3.161

7.  Shadow removal and contrast enhancement in optical coherence tomography images of the human optic nerve head.

Authors:  Michaël J A Girard; Nicholas G Strouthidis; C Ross Ethier; Jean Martial Mari
Journal:  Invest Ophthalmol Vis Sci       Date:  2011-09-29       Impact factor: 4.799

8.  Automated identification of basal cell carcinoma by polarization-sensitive optical coherence tomography.

Authors:  Lian Duan; Tahereh Marvdashti; Alex Lee; Jean Y Tang; Audrey K Ellerbee
Journal:  Biomed Opt Express       Date:  2014-09-22       Impact factor: 3.732

9.  Atherosclerotic tissue characterization in vivo by optical coherence tomography attenuation imaging.

Authors:  Gijs van Soest; Thadé Goderie; Evelyn Regar; Senada Koljenović; Geert L J H van Leenders; Nieves Gonzalo; Sander van Noorden; Takayuki Okamura; Brett E Bouma; Guillermo J Tearney; J Wolter Oosterhuis; Patrick W Serruys; Anton F W van der Steen
Journal:  J Biomed Opt       Date:  2010 Jan-Feb       Impact factor: 3.170

10.  In vivo characterization of coronary atherosclerotic plaque by use of optical coherence tomography.

Authors:  Ik-Kyung Jang; Guillermo J Tearney; Briain MacNeill; Masamichi Takano; Fabian Moselewski; Nicusor Iftima; Milen Shishkov; Stuart Houser; H Thomas Aretz; Elkan F Halpern; Brett E Bouma
Journal:  Circulation       Date:  2005-03-21       Impact factor: 29.690

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  21 in total

1.  Analysis of attenuation coefficient estimation in Fourier-domain OCT of semi-infinite media.

Authors:  Babak Ghafaryasl; Koenraad A Vermeer; Jeroen Kalkman; Tom Callewaert; Johannes F de Boer; Lucas J Van Vliet
Journal:  Biomed Opt Express       Date:  2020-10-06       Impact factor: 3.732

2.  Determination of confocal profile and curved focal plane for OCT mapping of the attenuation coefficient.

Authors:  Sabina Stefan; Ki-Soo Jeong; Collin Polucha; Nikos Tapinos; Steven A Toms; Jonghwan Lee
Journal:  Biomed Opt Express       Date:  2018-10-01       Impact factor: 3.732

3.  Multimodal 3D cancer-mimicking optical phantom.

Authors:  Gennifer T Smith; Kristen L Lurie; Dimitar V Zlatev; Joseph C Liao; Audrey K Ellerbee Bowden
Journal:  Biomed Opt Express       Date:  2016-01-25       Impact factor: 3.732

4.  Robust, accurate depth-resolved attenuation characterization in optical coherence tomography.

Authors:  Kaiyan Li; Wenxuan Liang; Zihan Yang; Yanmei Liang; Suiren Wan
Journal:  Biomed Opt Express       Date:  2020-01-09       Impact factor: 3.732

5.  Whole mouse brain imaging using optical coherence tomography: reconstruction, normalization, segmentation, and comparison with diffusion MRI.

Authors:  Joël Lefebvre; Alexandre Castonguay; Philippe Pouliot; Maxime Descoteaux; Frédéric Lesage
Journal:  Neurophotonics       Date:  2017-07-11       Impact factor: 3.593

6.  Characterizing the optical properties of human brain tissue with high numerical aperture optical coherence tomography.

Authors:  Hui Wang; Caroline Magnain; Sava Sakadžić; Bruce Fischl; David A Boas
Journal:  Biomed Opt Express       Date:  2017-11-14       Impact factor: 3.732

7.  Quantifying optical properties with visible and near-infrared optical coherence tomography to visualize esophageal microwave ablation zones.

Authors:  Ryan C Niemeier; Sevde Etoz; Daniel A Gil; Melissa C Skala; Christopher L Brace; Jeremy D Rogers
Journal:  Biomed Opt Express       Date:  2018-03-13       Impact factor: 3.732

8.  Platform for quantitative multiscale imaging of tissue composition.

Authors:  Michael A Pinkert; Zachary J Simmons; Ryan C Niemeier; Bing Dai; Lauren B Woods; Timothy J Hall; Paul J Campagnola; Jeremy D Rogers; Kevin W Eliceiri
Journal:  Biomed Opt Express       Date:  2020-03-12       Impact factor: 3.732

9.  Quantitative research on the interaction between cerebral edema and peripheral cerebral blood perfusion using swept-source optical coherence tomography.

Authors:  Jian Liu; Yan Li; Yang Lin; Ziyue Meng; Xuyang Guo; Yao Yu; Zhenhe Ma
Journal:  Quant Imaging Med Surg       Date:  2021-03

10.  Characterization and quantification of necrotic tissues and morphology in multicellular ovarian cancer tumor spheroids using optical coherence tomography.

Authors:  Feng Yan; Gokhan Gunay; Trisha I Valerio; Chen Wang; Jayla A Wilson; Majood S Haddad; Maegan Watson; Michael O Connell; Noah Davidson; Kar-Ming Fung; Handan Acar; Qinggong Tang
Journal:  Biomed Opt Express       Date:  2021-05-13       Impact factor: 3.732

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