Literature DB >> 26120796

Structural basis of enzymatic benzene ring reduction.

Tobias Weinert1, Simona G Huwiler2, Johannes W Kung2, Sina Weidenweber1, Petra Hellwig3, Hans-Joachim Stärk4, Till Biskup5, Stefan Weber5, Julien J H Cotelesage6, Graham N George7, Ulrich Ermler1, Matthias Boll2.   

Abstract

In chemical synthesis, the widely used Birch reduction of aromatic compounds to cyclic dienes requires alkali metals in ammonia as extremely low-potential electron donors. An analogous reaction is catalyzed by benzoyl-coenzyme A reductases (BCRs) that have a key role in the globally important bacterial degradation of aromatic compounds at anoxic sites. Because of the lack of structural information, the catalytic mechanism of enzymatic benzene ring reduction remained obscure. Here, we present the structural characterization of a dearomatizing BCR containing an unprecedented tungsten cofactor that transfers electrons to the benzene ring in an aprotic cavity. Substrate binding induces proton transfer from the bulk solvent to the active site by expelling a Zn(2+) that is crucial for active site encapsulation. Our results shed light on the structural basis of an electron transfer process at the negative redox potential limit in biology. They open the door for biological or biomimetic alternatives to a basic chemical synthetic tool.

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Year:  2015        PMID: 26120796     DOI: 10.1038/nchembio.1849

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN: 1552-4450            Impact factor:   15.040


  37 in total

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Authors:  Grazyna B Seiffert; G Matthias Ullmann; Albrecht Messerschmidt; Bernhard Schink; Peter M H Kroneck; Oliver Einsle
Journal:  Proc Natl Acad Sci U S A       Date:  2007-02-27       Impact factor: 11.205

Review 2.  Molybdenum and tungsten enzymes: a crystallographic and mechanistic overview.

Authors:  Maria João Romão
Journal:  Dalton Trans       Date:  2009-03-14       Impact factor: 4.390

3.  High performance liquid chromatography determination of cyanide in urine by pre-column fluorescence derivatization.

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Review 4.  The molybdenum oxotransferases and related enzymes.

Authors:  Russ Hille
Journal:  Dalton Trans       Date:  2013-01-15       Impact factor: 4.390

5.  Metalloprotein active site structure determination: synergy between X-ray absorption spectroscopy and X-ray crystallography.

Authors:  Julien J H Cotelesage; M Jake Pushie; Pawel Grochulski; Ingrid J Pickering; Graham N George
Journal:  J Inorg Biochem       Date:  2012-07-06       Impact factor: 4.155

Review 6.  The benzoyl-coenzyme a reductase and 2-hydroxyacyl-coenzyme a dehydratase radical enzyme family.

Authors:  Wolfgang Buckel; Johannes W Kung; Matthias Boll
Journal:  Chembiochem       Date:  2014-09-09       Impact factor: 3.164

7.  Formaldehyde ferredoxin oxidoreductase from Pyrococcus furiosus: the 1.85 A resolution crystal structure and its mechanistic implications.

Authors:  Y Hu; S Faham; R Roy; M W Adams; D C Rees
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8.  An allylic ketyl radical intermediate in clostridial amino-acid fermentation.

Authors:  Jihoe Kim; Daniel J Darley; Wolfgang Buckel; Antonio J Pierik
Journal:  Nature       Date:  2008-03-13       Impact factor: 49.962

9.  Identification and characterization of the tungsten-containing class of benzoyl-coenzyme A reductases.

Authors:  Johannes W Kung; Claudia Löffler; Katerina Dörner; Dimitri Heintz; Sébastien Gallien; Alain Van Dorsselaer; Thorsten Friedrich; Matthias Boll
Journal:  Proc Natl Acad Sci U S A       Date:  2009-10-06       Impact factor: 11.205

10.  Aromatizing cyclohexa-1,5-diene-1-carbonyl-coenzyme A oxidase. Characterization and its role in anaerobic aromatic metabolism.

Authors:  Bärbel Thiele; Oliver Rieder; Nico Jehmlich; Martin von Bergen; Michael Müller; Matthias Boll
Journal:  J Biol Chem       Date:  2008-05-27       Impact factor: 5.157

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  11 in total

1.  An unusual strategy for the anoxic biodegradation of phthalate.

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Journal:  ISME J       Date:  2016-07-08       Impact factor: 10.302

2.  One-megadalton metalloenzyme complex in Geobacter metallireducens involved in benzene ring reduction beyond the biological redox window.

Authors:  Simona G Huwiler; Claudia Löffler; Sebastian E L Anselmann; Hans-Joachim Stärk; Martin von Bergen; Jennifer Flechsler; Reinhard Rachel; Matthias Boll
Journal:  Proc Natl Acad Sci U S A       Date:  2019-01-23       Impact factor: 11.205

Review 3.  The Enzymology of Organic Transformations: A Survey of Name Reactions in Biological Systems.

Authors:  Chia-I Lin; Reid M McCarty; Hung-Wen Liu
Journal:  Angew Chem Int Ed Engl       Date:  2017-02-14       Impact factor: 15.336

4.  Adaptations to a Loss-of-Function Mutation in the Betaproteobacterium Aromatoleum aromaticum: Recruitment of Alternative Enzymes for Anaerobic Phenylalanine Degradation.

Authors:  G Schmitt; F Arndt; J Kahnt; J Heider
Journal:  J Bacteriol       Date:  2017-09-19       Impact factor: 3.490

5.  The thermophilic biomass-degrading bacterium Caldicellulosiruptor bescii utilizes two enzymes to oxidize glyceraldehyde 3-phosphate during glycolysis.

Authors:  Israel M Scott; Gabriel M Rubinstein; Farris L Poole; Gina L Lipscomb; Gerrit J Schut; Amanda M Williams-Rhaesa; David M Stevenson; Daniel Amador-Noguez; Robert M Kelly; Michael W W Adams
Journal:  J Biol Chem       Date:  2019-05-16       Impact factor: 5.157

6.  Tungsten enzymes play a role in detoxifying food and antimicrobial aldehydes in the human gut microbiome.

Authors:  Gerrit J Schut; Michael P Thorgersen; Farris L Poole; Dominik K Haja; Saisuki Putumbaka; Michael W W Adams
Journal:  Proc Natl Acad Sci U S A       Date:  2021-10-26       Impact factor: 11.205

7.  A catalytically versatile benzoyl-CoA reductase, key enzyme in the degradation of methyl- and halobenzoates in denitrifying bacteria.

Authors:  Oliver Tiedt; Jonathan Fuchs; Wolfgang Eisenreich; Matthias Boll
Journal:  J Biol Chem       Date:  2018-05-16       Impact factor: 5.157

8.  The active site structure and catalytic mechanism of arsenite oxidase.

Authors:  Thomas P Warelow; M Jake Pushie; Julien J H Cotelesage; Joanne M Santini; Graham N George
Journal:  Sci Rep       Date:  2017-05-11       Impact factor: 4.379

9.  Four Molybdenum-Dependent Steroid C-25 Hydroxylases: Heterologous Overproduction, Role in Steroid Degradation, and Application for 25-Hydroxyvitamin D3 Synthesis.

Authors:  Christian Jacoby; Jens Eipper; Markus Warnke; Oliver Tiedt; Mario Mergelsberg; Hans-Joachim Stärk; Birgit Daus; Zaira Martín-Moldes; María Teresa Zamarro; Eduardo Díaz; Matthias Boll
Journal:  MBio       Date:  2018-06-19       Impact factor: 7.867

10.  An Abundant and Diverse New Family of Electron Bifurcating Enzymes With a Non-canonical Catalytic Mechanism.

Authors:  Gerrit J Schut; Dominik K Haja; Xiang Feng; Farris L Poole; Huilin Li; Michael W W Adams
Journal:  Front Microbiol       Date:  2022-07-08       Impact factor: 6.064

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