Thiol-mediated uptake is emerging as a powerful method to penetrate cells. Cyclic oligochalcogenides (COCs) have been identified as privileged scaffolds to enable and inhibit thiol-mediated uptake because they can act as dynamic covalent cascade exchangers, i.e., every exchange produces a new, covalently tethered exchanger. In this study, our focus is on the essentially unexplored COCs of higher oxidation levels. Quantitative characterization of the underlying dynamic covalent exchange cascades reveals that the initial ring opening of cyclic thiosulfonates (CTOs) proceeds at a high speed even at a low pH. The released sulfinates exchange with disulfides in aprotic but much less in protic environments. Hydrophobic domains were thus introduced to direct CTOs into hydrophobic pockets to enhance their reactivity. Equipped with such directing groups, fluorescently labeled CTOs entered the cytosol of living cells more efficiently than the popular asparagusic acid. Added as competitive agents, CTOs inhibit the uptake of various COC transporters and SARS-CoV-2 lentivectors. Orthogonal trends found with different transporters support the existence of multiple cellular partners to account for the diverse expressions of thiol-mediated uptake. Dominant self-inhibition and high activity of dimers imply selective and synergistic exchange in hydrophobic pockets as distinguishing characteristics of thiol-mediated uptake with CTOs. The best CTO dimers with hydrophobic directing groups inhibit the cellular entry of SARS-CoV-2 lentivectors with an IC50 significantly lower than the previous best CTO, below the 10 μM threshold and better than ebselen. Taken together, these results identify CTOs as an intriguing motif for use in cytosolic delivery, as inhibitors of lentivector entry, and for the evolution of dynamic covalent networks in the broadest sense, with reactivity-based selectivity of cascade exchange emerging as a distinguishing characteristic that deserves further attention.
Thiol-mediated uptake is emerging as a powerful method to penetrate cells. Cyclic oligochalcogenides (COCs) have been identified as privileged scaffolds to enable and inhibit thiol-mediated uptake because they can act as dynamic covalent cascade exchangers, i.e., every exchange produces a new, covalently tethered exchanger. In this study, our focus is on the essentially unexplored COCs of higher oxidation levels. Quantitative characterization of the underlying dynamic covalent exchange cascades reveals that the initial ring opening of cyclic thiosulfonates (CTOs) proceeds at a high speed even at a low pH. The released sulfinates exchange with disulfides in aprotic but much less in protic environments. Hydrophobic domains were thus introduced to direct CTOs into hydrophobic pockets to enhance their reactivity. Equipped with such directing groups, fluorescently labeled CTOs entered the cytosol of living cells more efficiently than the popular asparagusic acid. Added as competitive agents, CTOs inhibit the uptake of various COC transporters and SARS-CoV-2 lentivectors. Orthogonal trends found with different transporters support the existence of multiple cellular partners to account for the diverse expressions of thiol-mediated uptake. Dominant self-inhibition and high activity of dimers imply selective and synergistic exchange in hydrophobic pockets as distinguishing characteristics of thiol-mediated uptake with CTOs. The best CTO dimers with hydrophobic directing groups inhibit the cellular entry of SARS-CoV-2 lentivectors with an IC50 significantly lower than the previous best CTO, below the 10 μM threshold and better than ebselen. Taken together, these results identify CTOs as an intriguing motif for use in cytosolic delivery, as inhibitors of lentivector entry, and for the evolution of dynamic covalent networks in the broadest sense, with reactivity-based selectivity of cascade exchange emerging as a distinguishing characteristic that deserves further attention.
The classical “sulfur
redox switch” refers to the
oxidation into sulfoxides and sulfones and their respective reduction
back to sulfides.[1−6] This redox switch has emerged as a valuable tool to build functional
supramolecular systems, particularly concerning on/off switching of
peptide secondary structures,[1−3] amphiphilicity,[1,2] π-acidity,[5] optical properties,[4,5] chirality,[1,5] macrodipoles,[1,5,6] membrane
permeability,[2,6] voltage-gated ion channels,[6] and so on. The complementary oxidation of disulfides
did not attract attention in a similar context.[7]Unlike most sulfides,[8−11] disulfides are dynamic by nature,
and their exchange
is ubiquitous in chemistry and biology.[12−37] Cyclic oligochalcogenides (COCs) are of particular interest because
they provide access to dynamic covalent exchange cascades.[12,38−46] In the best explored cyclic disulfides, exchange with thiols produces
a new, covalently tethered thiol that can continue to exchange (Figure ).
Figure 1
Thiol-mediated uptake,
which occurs and gets inhibited by dynamic
covalent sulfur exchange with cellular partners, is explored here
using cyclic disulfides, cyclic thiosulfinates (X = O), as well as
cyclic thiosulfonates (CTO, X = O2).
Thiol-mediated uptake,
which occurs and gets inhibited by dynamic
covalent sulfur exchange with cellular partners, is explored here
using cyclic disulfides, cyclic thiosulfinates (X = O), as well as
cyclic thiosulfonates (CTO, X = O2).Analogous to sulfides, the oxidation of cyclic disulfides affords
cyclic thiosulfinates[12,46−48] and cyclic
thiosulfonates (CTOs).[7,12,48−60] Cyclic thiosulfinates have been shown to react rapidly and selectively
with proximal thiols to result in their cross-linking through disulfide
bonds (Figure ).[46] Pioneering studies by Castellano and co-workers
support that CTOs can exchange with one thiol and one disulfide to
afford a new disulfide, a new thiosulfonate, and a new thiol.[49] Such exchange cascades on the sulfur-rich growth
factor receptors and helicase zinc fingers have been implied to account
for antitumor and antiviral activity of selected CTOs.[49,50]
Figure 2
Conceivable
dynamic covalent exchange cascades of (A) cyclic disulfides,
(B) thiosulfinates, and (C) thiosulfonates. (D) The concept of reactivity-based
selectivity and directing groups: Activation of dynamic covalent sulfinate
chemistry in aprotic environments. (E) Possible exchange cascades
of thiosulfonate dimers with cellular thiols and disulfides during
uptake.
Conceivable
dynamic covalent exchange cascades of (A) cyclic disulfides,
(B) thiosulfinates, and (C) thiosulfonates. (D) The concept of reactivity-based
selectivity and directing groups: Activation of dynamic covalent sulfinate
chemistry in aprotic environments. (E) Possible exchange cascades
of thiosulfonate dimers with cellular thiols and disulfides during
uptake.Dynamic covalent exchange cascades
with cellular thiols and disulfides
are the hallmark of thiol-mediated uptake.[12,30,37,51,61] This approach, defined by inhibition with thiol-reactive
agents, is increasingly recognized as an attractive, general, and
practical method to deliver substrates of free choice into cells.
Reconsidering early insights into HIV,[61] the inhibition of thiol-mediated uptake received renewed attention
with the outbreak of the SARS-CoV-2 pandemic.[51] Besides direct translocation across the plasma membrane,[12−15] thiol-mediated uptake can also occur in combination with endocytosis,[52,62] fusion,[61] or mixed mechanisms. Thiol-mediated
direct translocation into the cytosol has so far been explored with
COCs covering disulfides of varied ring tension,[38−41] diselenides,[42] and benzopolysulfanes.[43] Emerging
as a general concept beyond COCs, we propose to refer to molecules
with this reactivity as “cascade exchangers”, or CAXs.
Their definition will be further generalized to dynamic covalent exchangers
that, upon exchange with thiols (or disulfides), produce a new (or
offer another) covalently tethered exchanger that can continue to
exchange. This form also covers, for instance, oligonucleotide phosphorothioates[52] or all acyclic oligo- and polymers, including
the increasingly popular cell-penetrating poly(disulfide)s.[12−16,36]COCs on higher oxidation
levels have not been considered for thiol-mediated
uptake. However, recent screenings revealed CTOs as good inhibitors
of both thiol-mediated uptake and the cellular entry of SARS-CoV-2
lentiviral vectors.[51] Herein, we examine
CTOs as potentially distinct new CAX. Exchange cascades with CTOs
are characterized by fast ring opening and selective continuation
in aprotic surroundings. This reactivity-based selectivity is shown
to translate into efficient cytosolic delivery that can be inhibited
with distinct selectivity. CTOs also inhibit the cellular entry of
lentivectors, the best below the 10 μM threshold.
Results and Discussion
Concepts
Ring-opening dynamic covalent exchange with
“exofacial” thiol/ates on the cell surface initiates
thiol-mediated cytosolic delivery of cyclic disulfides I (Figure A, II).[12] The released but covalently
tethered thiol/ate can then continue to exchange with accessible disulfides,
either nearby or after target conformational changes (III), to result in two disulfides bridging the opened CAX and the cellular
target(s) (IV). Since the first exofacial thiol often
originates from a disulfide, a nearby thiol remains to assist the
continuation of the exchange cascade through locally and temporarily
misfolded protein targets to cross the membrane into the cytosol eventually.
This process presumably involves also membrane disorganization, that
is, transient micellar pores.[12] Alternatively,
the nearby thiol could exchange with the newly formed disulfide to
release reduced dithiol CAXs (V) while blocking two essential
exofacial thiols as disulfide (VI), thereby inhibiting
thiol-mediated uptake.To launch exchange cascades with disulfide
COCs, the activation of ring opening by ring tension as in 1,2-dithiolanes
has proven powerful.[38] There is no evidence
for significant thiol-mediated uptake with 1,2-dithianes, presumably
because the equilibrium is shifted to the ring-closed side, a characteristic
best known from dithiothreitol as a universal disulfide reducing agent.
Oxidation of the diastereomeric dithioerythritol leads to cyclic disulfide 1 followed by the cyclic thiosulfinate 2 and
particularly CTO 3, the central motif of this study.
Exchange of cyclic thiosulfenates such as 2 with thiols
is fast (VII) and releases covalently tethered sulfinate,
which reacts with a nearby thiol (VIII) to yield another
disulfide (IX, Figure B).[46] Since the second step
is irreversible, the overall equilibrium shifts to the product side.[46] The resulting, doubly disulfide bridged product IX lost two exofacial thiols, suggesting that cyclic thiosulfinates
should be better inhibitors than transporters, although initiation
of an exchange cascade by another thiol/ate is of course conceivable.With CTOs like 3, the propensity of ring opening should
be even higher (X, Figure C). The released but tethered sulfinate (pKa = 2.7) in intermediate XI is not only a
good leaving group but also a weak nucleophile, possibly to be considered
as a proticity-dependent thiolate mimic capable of exchanging with
nearby disulfides (Figure D, vide infra).[48,49,63−65] Different from intermediate IV, the resulting doubly bridged intermediate XII contains one thiosulfonate bridge. In exchange cascades triggered
by nearby thiol/ates, participation of this preserved thiosulfonate
should make a difference in both reactivity and selectivity. Analogous
to III, intermediate XI can also undergo
disulfide exchange with a nearby thiol to release the reduced CAX XIII and the fully oxidized target VI. Masking
of essential exofacial thiols as disulfides (IV, VI, or IX) or thiosulfonate (XII) should have a detrimental effect on the thiol-mediated uptake of
reporters and viruses.Three strategies were considered to increase
the inhibitory and
uptake activity of CTOs further. (i) The addition of activating substituents
on the cycle to increase reactivity is conceptually trivial and mechanistically
intriguing, as detailed in the cascade analysis part of this study.
(ii) Hydrogen-bonding to the oxygens is expected to deactivate the
sulfinate obtained by ring-opening exchange as a nucleophile (XIV, Figure D).[66] In proteins, sulfinates are produced
by the oxidation of cysteine thiols, but deactivated through hydrogen
bonding, thus rarely exchanging with disulfides to form thiosulfonate
bridges.[67] We therefore decided to surround
CTOs by hydrophobic groups, which should direct CTOs into aprotic
pockets of proteins or membranes to prevent such inactivation (e.g., Figure C, XI, XII, blue circles, 2D, XV). Since thiolates
are less hydrogen-bonded, they will gain nucleophilicity only moderately
by their destabilization in a less polar environment[68] and rather be inactivated by protonation due to increased
pKa. Thus, the equilibrium of sulfinate-disulfide
exchange should shift toward the side of the thiosulfonate (XVI) and thiol products in aprotic environments.[64,65] This concept of reactivity-based selectivity from directing groups
could be expected to add unique characteristics to CTO exchange cascades.
(iii) CTO dimers such as 4 were attractive considering
that thiol-mediated uptake is thought to operate with dynamic covalent
exchange cascades. Dimers with appropriate tether length could thus
engage in multivalent exchanges with two targets within the same (XVII) or different proteins (XVIII, Figure E) to strengthen
their dynamic covalent binding.[69,70]
Synthesis
The
synthesis of all inhibitors and transporters
explored in this study was relatively straightforward (Schemes S1–S29). The CTO dimer 4, for instance, was accessible from dithioerythritol (DTE) 5 in four steps (Scheme ). Like the oxidation of sulfides into sulfoxides and
sulfones, disulfides can be oxidized into thiosulfinates and thiosulfonates
with mCPBA or H2O2. This oxidation
introduced asymmetry. With stereochemistry less relevant at this early
stage, CTO 3 was used as a racemic mixture. Monosilylation
gave 6 with high site-selectivity. The second alcohol
was reacted first with p-nitrophenyl (PNP) chloroformate,
and the stable intermediate 7 was then reacted with diamine 8. Dimer 4 was obtained as a mixture of three
stereoisomers, one pair of enantiomers, and the meso compound.
Scheme 1
Synthesis of Cyclic Thiosulfonate Dimers
H2O2, AcOH,
rt, 20 h, 41%.
TBSOTf, 2,6-lutidine,
THF, −78 °C to rt, 3.5 h, 87%.
One objective of this study was to
identify properties, including less obvious ones, that could be of
use to elucidate thiol-mediated uptake. In this spirit, chalcogen
bonding[71−76] of anions to sulfur was considered as an unorthodox approach to
possibly parametrize the electrophilicity of cascade exchangers. Related
to the antibonding σ* orbital, ideal chalcogen bonds extend
linearly from the covalent S–S bond.Various hydrogen-bonding
patterns with axial and equatorial oxygen substituents and their binding
to the anion added too many variables for computational modeling with
the vicinal alcohols in 1–3 for straightforward
predictions. Moreover, hydroxyl groups are absent in the most active
dimer 4 and the cyclic carbonate (below). Computational
simulations were thus initiated with the substituent-free 1,2-dithiane
1,1-dioxide (Figure E). For fluoride as chalcogen-bond acceptor, the M06-2X/6-311++G**
minimized[76] structure placed the anion
at 1.95 Å from the sulfur, which is shorter than the sum of their
Van der Waals (VdW) radii (3.27 Å) and longer than covalent S–F
bonds (∼1.6 Å, Figure E). By formal reduction to 1,2-dithiane 1-oxide and
1,2-dithiane, the fluoride–sulfur distances increased to 2.03
and 2.08 Å (Figure F,G). The 1,2-dithiane 1-oxide with the oxygen in axial position
was confirmed[51,77] to be more stable (–2.65
kcal mol–1), and its chalcogen bond marginally shorter
than that in the isomer with equatorial oxygen (2.04 Å, Figure S59a). Chalcogen-bond length thus correlated
well with ring-opening rates (see below). Chalcogen-bond angles were
>171° for all cases, close to perfection without much room
for
improvement.
Figure 3
(A) Comparison of ring-opening rate constants (kO) for the exchange reactions of 2, 3, and 11–18 with 10 (Table ); (a) deuterated
buffer/DMSO-d6 95:5, rt, t50 = <15 min, 84 min, 18 h, and ≫24 h at pD
7.9, 6.7, 5.4, and 4.7, respectively. (B) Dynamic covalent ring opening
of CTO 3 and thiol 10 to give product 9. (C) Original kinetic data for the equilibration of 3 with 10 at pD 2.7 in deuterated phosphate buffer/DMSO-d6 9:1. Gold triangles: 3; purple
circles: 9; filled diamonds: 10; empty diamonds:
homo-disulfide of 10. (D) Dependence of K (filled circles) and rate constants (relative, k at 90% D2O as 1, kO filled
diamonds, kC empty diamonds) for 3 with 10 at pD 2.7 (estimate) on solvent polarity.
(E–G) Fluoride complexes of 1,2-dithiane 1,1-dioxide (E), 1,2-dithiane
1-oxide (F), and 1,2-dithiane (G), calculated with M06-2X/6-311++G**
(green: F–, yellow: S, red: O, gray: C, white: H).
(H, I) Chloride complexes of 3 (H) and 1 (I, green: Cl–, in parentheses: bond length for
F–). (J) Fragmentation of 11 with 10; (b) 10, DMSO-d6, rt.
(A) Comparison of ring-opening rate constants (kO) for the exchange reactions of 2, 3, and 11–18 with 10 (Table ); (a) deuterated
buffer/DMSO-d6 95:5, rt, t50 = <15 min, 84 min, 18 h, and ≫24 h at pD
7.9, 6.7, 5.4, and 4.7, respectively. (B) Dynamic covalent ring opening
of CTO 3 and thiol 10 to give product 9. (C) Original kinetic data for the equilibration of 3 with 10 at pD 2.7 in deuterated phosphate buffer/DMSO-d6 9:1. Gold triangles: 3; purple
circles: 9; filled diamonds: 10; empty diamonds:
homo-disulfide of 10. (D) Dependence of K (filled circles) and rate constants (relative, k at 90% D2O as 1, kO filled
diamonds, kC empty diamonds) for 3 with 10 at pD 2.7 (estimate) on solvent polarity.
(E–G) Fluoride complexes of 1,2-dithiane 1,1-dioxide (E), 1,2-dithiane
1-oxide (F), and 1,2-dithiane (G), calculated with M06-2X/6-311++G**
(green: F–, yellow: S, red: O, gray: C, white: H).
(H, I) Chloride complexes of 3 (H) and 1 (I, green: Cl–, in parentheses: bond length for
F–). (J) Fragmentation of 11 with 10; (b) 10, DMSO-d6, rt.
Table 1
Cascade
Exchange Analysisa
Cb
pDc
D2O (%)d
ce (mM)
kOf (M–1 s–1)
krelOg
Kh (103 M–1)
1
3
5.4
90
5
>0.49
1
6.0
2
3
2.7
90
5
0.10i
1
0.50j
3
3
2.7k
90
5
0.15
0.71
4
3
2.7k
70
5
0.28
1.0
5
3
2.7k
50
5
>1.3
1.8
6
3
2.7k
30
5
>2.8
2.3
7
3
2.7k
10
5
>2.1
2.1
8
3
2.7k
8
5
>1.4
1.3
9
3
2.7k
5
5
>1.3
0.94
10
3
2.7k
2
5
>1.4
0.73
11
15
2.7
90
5
>0.56
>5.6
2.0
12
11
2.7
90
2
>12
>120
>170
13
12
2.7
90
2
>6.1
>61
21
14
13
2.7
90
2
2.3
23
17
15
14
2.7
90
2
0.52
5.2
16
16
5.4
90
5
0.11
<0.22
17
17
5.4
85l
5m
0.004
<0.008
18
2
5.4
85l
5m
0.001
<0.002
19
18
5.4
90
5
NR
From 1H NMR kinetics
with equimolar 10 at rt (Figure ).
Cascade exchangers and acyclic controls
(Figure ).
pD of the same concentration and
composition of Na+ phosphate solution in D2O.
Fraction of D2O
in a
mixture with DMSO-d6 containing Na+ phosphate (180 mM, unless stated), pD as indicated.
Substrate concentration.
Rate constant of ring opening (or
equivalent for acyclic controls).
Rate constant of ring opening relative
to 3 at pD 2.7 or 5.4.
Equilibrium constant for ring opening
and closing.
Mean of independent
experiments
(SEM = 30%; SEM of technical replicates: 3%).
Mean of independent experiments
(SEM = 10%; SEM of technical replicates: 0.4%).
Estimated pD. Na+ phosphate
(20 mM in solvent mixture).
Na+ phosphate (170 mM
in solvent mixture).
2
equiv of 10 were
used.
Calculations with chloride in
place of fluoride did not afford
stable complexes for 1,2-dithiane, its thiosulfinate and thiosulfonate.
For CTO 3, modeled in a conformation without contributions
from hydrogen bonding, a stable chloride complex could be computed
with a chalcogen-bond angle of 172° and a bond length of 3.04
Å (VdW radii = 3.55 Å, S···F–: 1.89 Å, Figures H and S59b). The chloride complex of disulfide 1 was stable as well, featuring a chalcogen bond length of
3.44 Å and an angle of 161°, that is 19° deviated from
linearity (S···F–: 1.98 Å, Figures I and S59c). These results were in qualitative agreement
with those of F– binding to the 1,2-dithiane redox
series, thus further calculations with thiosulfinate 2 were considered unnecessary. Taken together, the consistent trends
obtained suggested that computed length of chalcogen bonds could serve
as valuable contributors to parametrize the exchange cascades accounting
for thiol-mediated uptake.The dynamic covalent opening of CTO 3 with thiols
yields product 9 with a disulfide and a sulfinate (Figure B). Consistent with
short chalcogen bonds found in silico, the opening
of CTO 3 was instantaneous on an NMR timescale with most
thiols. To decelerate ring opening, bulky thiols were considered in
combination with lowered pH to deactivate the nucleophile. With N-Ac-d-penicillamine 10, the opening
of 5 mM CTO 3 in phosphate buffer/DMSO-d6 9:1 was still immediate at pD 6.7 but became detectable
in 1H NMR spectroscopy kinetics under more acidic conditions.
The ring-opening rate constants kO were
estimated by fitting the initial velocities to second-order kinetics.
Only lower bound rates were approximated from the earliest determined
substrate conversions when reactions were still too fast despite the
unfavorable conditions. At pD 5.4, dynamic covalent ring opening of
CTO 3 with equimolar tertiary thiol 10 occurred
with kO > 0.49 M–1 s–1 and equilibrated at K = 6.0
×
103 M–1 (Table , entry 1, Figures S4 and S5). At pD 2.7, further deceleration
to kO = 0.10 M–1 s–1 shifted the equilibrium to K = 500
M–1 (Table , entry 2, Figures S6 and S7).
Original kinetics for equimolar exchangers revealed how these data
translate to about 50% conversion, yielding at equilibrium about equal
amounts of closed CTO 3 and opened sulfinate 9 as a mixture of diastereomers (Figure C, circles and triangles). At equilibrium,
the concentration of thiol 10 further decreased slowly
due to oxidation into the homodimer (Figure C, diamonds).From 1H NMR kinetics
with equimolar 10 at rt (Figure ).Cascade exchangers and acyclic controls
(Figure ).pD of the same concentration and
composition of Na+ phosphate solution in D2O.Fraction of D2O
in a
mixture with DMSO-d6 containing Na+ phosphate (180 mM, unless stated), pD as indicated.Substrate concentration.Rate constant of ring opening (or
equivalent for acyclic controls).Rate constant of ring opening relative
to 3 at pD 2.7 or 5.4.Equilibrium constant for ring opening
and closing.Mean of independent
experiments
(SEM = 30%; SEM of technical replicates: 3%).Mean of independent experiments
(SEM = 10%; SEM of technical replicates: 0.4%).Estimated pD. Na+ phosphate
(20 mM in solvent mixture).Na+ phosphate (170 mM
in solvent mixture).2
equiv of 10 were
used.Cascade exchangers
and controls 2, 11–18 were tested under similar conditions (Figures A and S8–S27). As expected, the opening of cyclic
thiosulfinate 2 was >500× slower (Table , entry 18). Among acyclic controls,
thiosulfonate 14 exchanged faster than thiosulfinate 17 and disulfide 18, which did not exchange under
these unfavorable conditions (entries 15, 17, 19). The activated disulfide 16, i.e., Ellman’s reagent DTNB, exchanged faster than
thiosulfinates 17 and 2 but >5×
slower
than the lead CTO 3 (entry 16). The dithiothreitol (DTT)
diastereomer 15 opened 5× as fast as 3 and equilibrated more on the opened side, perhaps because the intramolecular
hydrogen bonding in the open form is more favorable (entry 11).The strained cyclic carbonate 11 was considered to
accelerate CTO opening and further stabilize the opened form (entry
12). However, at pD 7.9, carbonate 11 decarboxylated
within 15 min to CTO alkene 12. This degradation decelerated
with decreasing pD to afford stable carbonate 11 for
at least 1 day at pD 4.7 (Figure A). Ring opening of 11 was too fast even
at pD 2.7, it proceeded to near completion with a >100× higher
rate than 3. Decarboxylated alkene 12 reacted
also very fast, the apparently lower rate is the consequence of more
favorable ring closure back to 12 due to preorganization
by the cis alkene (entry 13). The alternative Michael
addition of thiol 10 to alkene 12 was not
observed (Figure S12).With thiol 10 in DMSO-d6 without aqueous
phosphate solution, carbonate 11 further
fragmented through 19 into 20, releasing
SO2 and CO2 (Figures J and S44, Scheme S30). The cyclic acetal 13 was thus considered as a more
stable analog of carbonate 11 (Figure A). This gain in stability came at the cost
of fast ring opening, with rates for 13 still about 4×
those of the acyclic control 14 (entry 14).As
explained above as the basis of the envisioned directing groups
and the reactivity-mediated selectivity model (Figure D), varied proticities as found in biological
microenvironments can affect thiolate protonation, sulfinate activation
by H-bond removal, and so on. The ring-opening equilibria of CTO 3 depended indeed strongly on solvent proticity (Figures D and S28–S43, Table , entries 3–10). From the 90% deuterated
phosphate buffer in DMSO-d6 used above
to compare opening kinetics, decreasing D2O content at
constant phosphate concentration caused a shift of equilibrium to
the product side (Figure D, circles). This shift occurred because kO increased more than kC (= kO/K) (Figure D, diamonds). However, further decreasing
D2O content from 25 to ≤10% shifted the equilibrium
strongly to the closed form. The resulting bell-shaped dependence
of the opening equilibrium of CTO 3 on protic solvents
thus revealed strong acceleration of ring closure at sufficiently
low water content due to more significant activation of sulfinate
than thiolate exchangers (Figure D, XV, XVI).This proticity-dependent
reactivity of sulfinates was thus in support
of the concept of directing groups for reactivity-based selectivity
(Figure D). However,
possible alternative interpretations of results with cascade exchanger 3 called for model studies with the minimalist sulfinate exchanger 21 (Figure A). The formation of thiosulfonate 22 by dynamic covalent
exchange with DTNB 16 was detectable by the appearance
of the absorption of conjugate thiolate base of 23 (Figure S47). Exchange became detectable only
at <10% water content in DMF, buffered at pH = 7.4. Decreasing
water content from 8% caused a sharp shift of equilibrium to the thiosulfonate
product 22 (Figure B, circles). Exchange with thiol 10 shifted
with decreasing water content first to the side of disulfide product 24 (Figure B, diamonds, S48). However, at <5%
water, conditions where exchange with the anionic sulfinate 21 really turns on, exchange with the increasingly neutral
thiol/ate 10 stopped accelerating. While the initially
increasing exchange rate with 10 at decreasing water
content was consistent with thiolate activation by its destabilization
in reduced polarity,[68] the plateau at low
proticity presumably originated from the onset of thiolate protonation
(Figure B, diamonds),
which obviously does not occur as easily with the less basic sulfinate 21 (Figure B, circles). Overlay of the dependence of exchange equilibria with
sulfinate 21 and thiol/ate 10 on solvent
proticity (Figure B) qualitatively reproduced the bell-shaped dependence obtained with
CTO 3 (Figure D). This good correlation was important because it supported
that the findings made at pD 2.7 (Figure D) are valid also at pH 7.4, and because
it supported that the activation of the sulfinate exchanger with decreasing
proticity (Figure D) indeed accounts for the emergence of ring closure of opened 9 into CTO 3 (Figure D).
Figure 4
(A) Model experiments for exchange of sodium
sulfinate 21 and thiol 10 with disulfide 16. (B) Dependence
of K for the exchange of 21 and 16 (red circles) compared to thiol 10 and 16 (blue diamonds) on the water content in DMF, normalized
against K at 8% H2O (PBS, pH = 7.4). (C)
Exchange of sulfinate 21 with cystine 25; Py = pyrene. (D) Normalized emission spectra (λex = 344 nm) measured every 6 min after the addition of 21 to 25 in DMF/PBS 95:5, pH 7.4. (E) Same in DMF/PBS
50:50.
(A) Model experiments for exchange of sodium
sulfinate 21 and thiol 10 with disulfide 16. (B) Dependence
of K for the exchange of 21 and 16 (red circles) compared to thiol 10 and 16 (blue diamonds) on the water content in DMF, normalized
against K at 8% H2O (PBS, pH = 7.4). (C)
Exchange of sulfinate 21 with cystine 25; Py = pyrene. (D) Normalized emission spectra (λex = 344 nm) measured every 6 min after the addition of 21 to 25 in DMF/PBS 95:5, pH 7.4. (E) Same in DMF/PBS
50:50.The ability of a minimalist, cascade-decoupled
sulfinate exchanger
like 21 to exchange with disulfides of cystine in cellular
partners in thiol-mediated uptake was probed with the pyrene labeled
model 25 (Figure C). Decrease of the excimer band in the emission spectrum
of dimer 25 confirmed that sulfinate 21 exchanges
with disulfides of cystine in cellular partners, affording the two
pyrene monomers 26 and 27 (Figure D,C). The velocity of this
exchange decreased with increasing solvent proticity (Figure E). These results thus identified
CTO 3 as operational CAX for cellular disulfides, and
demonstrated that dynamic covalent exchange cascades with CTOs like 3 are selective for low-proticity environments needed to activate
sulfinate exchangers. This reactivity-based selectivity is absent
in cyclic disulfides and, thus, a unique characteristic of CTOs (Figure D).Taken together,
the main findings of this section toward parametrizing
characteristics of CAXs and thus thiol-mediated uptake are as follows:
(1) CTOs open faster than cyclic disulfides and thiosulfinates. (2)
Chalcogen bonding to chloride or fluoride anions reflects these trends
by bond shortening with increasing oxidation levels. (3) Low-proticity
environment causes strong activation of sulfinates compared to thiols,
affecting the exchange equilibria. We hope that these trends and their
functional significance will encourage comprehensive studies on this
important topic.
Transporters
To assess the cellular
uptake of CTOs,
the fluorescently labeled transporters 28 and 29 were prepared (Figure ). These two lead structures were selected
based on extensive screenings of cytosolic delivery and lentivector
uptake inhibitors (vide infra). The synthesis of
new transporters 28 and 29 is described
in the Supporting Information (Scheme S29).
Figure 5
New (28, 29) and old (30–32) transporters for thiol-mediated cytosolic
delivery used in this study, with (A) fluorescence intensity of HK
cells in SDCM images after incubation with 20 μM 28 (B), 29 (C), and 30 (D), original multiwell
plates for automated transporter imaging with HK cells incubated with 28 (B), 29 (C), and 30 (D, 10, 20,
50 μM, left to right), and (E) large and (F) small magnifications
of (B). Scale bars: 100 μm. Compounds 28 and 29 are regioisomeric mixtures.
New (28, 29) and old (30–32) transporters for thiol-mediated cytosolic
delivery used in this study, with (A) fluorescence intensity of HK
cells in SDCM images after incubation with 20 μM 28 (B), 29 (C), and 30 (D), original multiwell
plates for automated transporter imaging with HK cells incubated with 28 (B), 29 (C), and 30 (D, 10, 20,
50 μM, left to right), and (E) large and (F) small magnifications
of (B). Scale bars: 100 μm. Compounds 28 and 29 are regioisomeric mixtures.Cellular uptake was measured by automated high-content high-throughput
(HCHT) imaging.[51] This method provides
access to biologically meaningful and statistically relevant data
from thousands of cells within a very short time. For the uptake monitoring,
HeLa Kyoto (HK) cells in multiwell plates were incubated with the
fluorescent transporters 28–30 for
1 h, washed, and imaged by spinning disk confocal microscopy (SDCM)
to quantify the fluorescent transporters that have entered the cells.
Both CTOs transporters 28 and 29 were more
active than the AspA 30 standard (Figure A–D). The better activity of CTOs 28 compared to 29 was consistent with the concept
of hydrophobic directing groups, expected to guide CTOs into an aprotic
environment within membranes or proteins to activate the sulfinate
exchanger and thus turn on dynamic covalent exchange cascades with
cellular partners (Figure D). The passive diffusion of transporter 28 across
the membrane is conceivable but unlikely because this process can
be inhibited by other CAXs (see the next section).Consistent
with the importance of dynamic covalent exchange cascades,
the disulfide analog of CTO 29, fluorescently labeled
DTT/DTE 1, has been shown previously to be less active
than AspA 30 as a transporter.[38] Intermediate thiosulfinate derivatives of 2 were not
judged promising as transporters due to their much slower exchange
(Figure ) and weaker
inhibition compared to CTOs (below), together with mechanistic considerations
(Figure B).One advantage of HCHT imaging of cellular uptake compared to flow
cytometry[38,42,43] is that it
simultaneously gives information on toxicity and intracellular localization.
Relative viability can be extracted by comparing the number of cells
stained with Hoechst 33342 (HOE) and dead cells stained with propidium
iodide (PI). Information on the intracellular localization of reporters
can be quantified through segmentation of cellular compartments stained
with specific markers.[52] For CTO 28, microscopy images revealed a major diffused staining all
over the cell body, which confirmed a dominant cytosolic delivery
(Figure E,F). The
minor punctate structures could be associated with negligible endolysosomal
accumulation.Cytosolic delivery is a hallmark of thiol-mediated
uptake, which
accounts for its usefulness in practice.[12] However, images of similarly even distribution in cells have been
reported so far only for diselenolanes.[42] In the absence of targeting units, AspA 30 affords
more punctate features in agreement with increasing contributions
from endocytosis, mostly, but not only, mediated by the transferrin
receptor.[41] The same is observed for OPS 32, known to exchange with many different membrane proteins.[52] Benzopolysulfanes[43] and particularly ETP 31(39) accumulate more in the nucleus. Although interesting, these intrinsic
intracellular distributions are of minor importance because attached
targeting groups can dictate the destination of transporters once
in the cytosol.[78]
Inhibitors of Cytosolic
Delivery
Thiol-mediated uptake
is proven by its inhibition with thiol-reactive agents, including
“self-inhibition” by the same cascade exchangers (Figures and 2A–C). The inhibition of CTO 28 uptake
was thus explored in comparison to known transporters, that is, the
fluorescently labeled ETP 31(39) and OPS 32(52) (Figures and S49–S58; Tables and S1–S11). Pertinent inhibitor candidates
were selected from dynamic covalent exchangers centered around CTOs
(2–4, 11–18) and the lentivector entry inhibitor candidates (33–44, Figure A), complemented
by thiol-reactive controls beyond CTOs (45–49, Figure B, Table ). Many
more exchangers were examined, i.e., 50–78, but they were either poorly active, highly toxic, or unable
to reveal new, significant trends beyond the ones described below.
Their structures, synthesis, and inhibitory activities are thus duly
reported in the Supporting Information.
Table 2
Inhibition of Cytosolic Deliverya
Ib
Tc
condd
MICe (μM)
IC50f (μM)
RV50g (μM)
1h
2
31
P
800
>5000
4400
2
2
28
P
>50
>100
>100
3h
3
31
P
200
>1000
1300
4
3
28
P
5
60
>1000
5i
3
32
P
250
550
6
3
31
C
3
35
>1000
7
15
31
C
1.5
22
>500
8
11
31
P
1.5
9
>20
9
11
31
C
<5
>50
>50
10
11
28
C
<1
>50
>50
11
12
31
C
<1
7
>50
12
12
28
C
5
60
100
13
4
28
C
0.3
≈15
>5
14
33
28
C
1
>5
>5
15
34
31
P
3
>100
>100
16
34
31
C
16
>100
>100
17
34
28
C
1
26
>50
18
35
31
C
9
51
>100
19
35
28
C
4
25
>50
20
45
31
P
<1
10
>20
21
45
31
C
2
8
>20
22i
45
32
P
>100
>100
23
45
28
P
1
8
>20
24
36
31
C
2
27
>50
25
37
31
C
7
≈60
>50
26
38
31
C
23
47
>50
27
39
31
C
14
≈60
>50
28
40
31
C
8
50
>50
29
46
31
C
<2
49
>100
30h
47
31
P
≤0.1
1.3
35
31
47
28
P
>10
>10
>10
32i
47
32
P
2
50
33j
48
31
P
<1
4
>20
34j
49
31
P
4
40
60
35i
49
32
P
0.3
10
36
49
28
P
9
53
>50
37
41
28
C
1
8
>50
38
42
28
P
2
5
22
39
43
28
P
4
>50
43
40
44
28
P
4
From HCHT
imaging of HK cells incubated
first with
inhibitors I
at varied concentrations
for 1 h and then with
transporters
T at the constant concentration
(28, 5 μM; 31, 10 μM; 32, 0.5 or 1 μM) for 30 min, reporting fluorescence
intensity of T inside intact, PI negative cells.
Conditions: P = pre-incubation:
I removed before addition of T. C = co-incubation: I not removed before
addition of T.
Concentration
needed to reach 15%
inhibition.
Concentration
needed to reach 50%
inhibition. SEM ≤ 30%.
Concentration needed to lower relative
viability (RV) by 50%. RV: number of PI negative cells divided by
HOE-positive cells. SEM ≤ 30%.
Data from ref (51).
Data from ref (52).
Data from ref (79).
Figure 6
(A) Cascade
exchanging inhibitor candidates 3–4, 11, 15, and 33–44 and (B) controls 45–49 (Tables –3). *Alternative
position of SO2.
(A) Cascade
exchanging inhibitor candidates 3–4, 11, 15, and 33–44 and (B) controls 45–49 (Tables –3). *Alternative
position of SO2.
Table 3
Inhibition of SC2 Lentivector Entrya
Ib
c (μM)c
VE (%)d
RV (%)e
1
4
10
46 ± 8
103
2
33
10
56 ± 12
107
3
11
50
4 ± 1
84
4
34
50
8 ± 6
76
5
35
50
25 ± 3
96f
6
45
50
31 ± 3
81
7
36
50
34 ± 3
97
8
3
50
36 ± 3
81
9
37
50
42 ± 32
97f
10
38
50
43 ± 26
37
11
39
50
52 ± 31
86f
12
40
50
64 ± 25
96f
13
46
50
65 ± 13
40f
14
47
50
83 ± 12
70
15
41
5
>100f
100
16
48
5
>100
94
17
49
5
>100
92
18
16
5
>100
89
19
42
10
97 ± 15
107
20
43
10
99 ± 12
87
21
44
10
103 ± 12
98
From normalized luminescence intensity
of A549 human lung alveolar basal epithelium cells overexpressing
ACE2 and TMPRSS2 after incubation with
inhibitor candidates at
concentrations c (1 h) and lentivirus
with D614G SC2 spike protein (6 h), followed
by 3 days for luciferase expression, reported as
vector entry (VE) in % (n = 3,
±SD).
RV: Relative
cell viability. SD
≤ 10%.
SD > 10%.
From HCHT
imaging of HK cells incubated
first withinhibitors I
at varied concentrations
for 1 h and then withtransporters
T at the constant concentration
(28, 5 μM; 31, 10 μM; 32, 0.5 or 1 μM) for 30 min, reporting fluorescence
intensity of T inside intact, PI negative cells.Conditions: P = pre-incubation:
I removed before addition of T. C = co-incubation: I not removed before
addition of T.Concentration
needed to reach 15%
inhibition.Concentration
needed to reach 50%
inhibition. SEM ≤ 30%.Concentration needed to lower relative
viability (RV) by 50%. RV: number of PI negative cells divided by
HOE-positive cells. SEM ≤ 30%.Data from ref (51).Data from ref (52).Data from ref (79).Uptake
inhibition was measured by the automated HCHT imaging used
already to elaborate on cytosolic delivery. For inhibitor screening,
HK cells in multiwell plates were incubated with increasing concentrations
of inhibitors, followed by fluorescent transporters 28, 31, and 32 at a constant concentration.
After the renewal of extracellular medium and addition of HOE and
PI, the dose response of transporter fluorescence was recorded and
analyzed only of PI negative, live cells to yield MIC at ∼15%
inhibition and, if accessible, IC50 at 50% inhibition (Figure A,B, Table ). If inhibitors are removed
before the addition of transporters 28, 31, and 32, the method is referred to as “pre-incubation”.
This is of interest to minimize exchange between the transporter and
the inhibitor but is often problematic because dynamic covalent exchange
between the inhibitor and cellular target can also be reversed and
thus lost. The complementary “co-incubation” operates
without inhibitor removal before the addition of transporters 28, 31, and 32. In this case, apparent
inhibition might arise from the inhibitor exchanging with transporter
instead of cellular thiols. However, this is less likely to occur
without ring opening by a thiol (Figure A–C), and ring-opened transporters
remain dynamic to preserve partial and possibly regain full activity,
depending on conditions (Figure B–D). Nevertheless, such contributions cannot
be fully excluded. Ring-opening polymerization[12] of transporters and inhibitors are not likely to take place
under these conditions because compared to known polymerization conditions
of cyclic disulfides, concentrations are too low and ring back-closure
too favorable. Presumably irrelevant for uptake inhibition, we however
like to point out that controlled ring-opening polymerization of CTOs,
ETPs, and other new CAXs should be of general interest in the future,
particularly for dynamer materials science applications.[12,21−23]
Figure 7
(A) Multiwell plate for automated inhibitor screening
with HK cells
incubated first with inhibitor 3 (0, 10, 20, 50, 100
μM, left to right) and then with CTO transporter 28 (constant concentration). (B) Dose–response curve from automated
screening for uptake inhibition of CTO 28 by cyclic thiosulfinate 2 (empty circles) and CTO 3 (filled circles).
(C) Comparison of the relative ring-opening rates (kO) and MICs of transporters (green circles: 31; purple diamonds: 28) under co-incubation (empty symbols)
or pre-incubation conditions (filled symbols). Downward arrows indicate
the MICs to be lower.
(A) Multiwell plate for automated inhibitor screening
with HK cells
incubated first with inhibitor 3 (0, 10, 20, 50, 100
μM, left to right) and then with CTO transporter 28 (constant concentration). (B) Dose–response curve from automated
screening for uptake inhibition of CTO 28 by cyclic thiosulfinate 2 (empty circles) and CTO 3 (filled circles).
(C) Comparison of the relative ring-opening rates (kO) and MICs of transporters (green circles: 31; purple diamonds: 28) under co-incubation (empty symbols)
or pre-incubation conditions (filled symbols). Downward arrows indicate
the MICs to be lower.Within the monomeric
redox series, the inhibitory activities related
well to the ring-opening rates (Figure C). Increasing inhibition of ETP 31 uptake
from both S–O stereoisomers of cyclic thiosulfinate 2 to the cyclic thiosulfonate 3 was previously reported[51] and in agreement with 1000× faster and
chemically distinct exchange cascades (Table , entries 1, 3; Figure B,C). The same trend was found for the new
CTO transporter 28: CTO 3 inhibited uptake
clearly better than the less reactive cyclic thiosulfinate 2 (Figure B, Table , entries 2, 4). Under
pre-incubation conditions, CTO 3 inhibited the uptake
much more efficiently of CTO 28 than of ETP 31 and OPS 32 (entries 3–5). Against ETP 31, a much lower MIC was obtained under co-incubation conditions
(entries 3, 6). The difference between pre- and co-incubation suggested
that the dynamic covalent inhibition of the cellular partners in the
uptake of ETP 31 is easily reversed during the exchange
of the media applied to remove unreacted and rapidly releasable CTO 3. Consistent with this interpretation, the faster DTT-derived trans diastereomer 15 was slightly more active
under co-incubation conditions (entry 7; Figure C).Acceleration of dynamic covalent
exchange with the cyclic carbonate 11 further enhanced
inhibition of both ETP 31 and CTO 28 (entries
8–10). With the decarboxylation
product 12, inhibition of ETP 31 exceeded
CTO 28, and the high activity was conserved (entries
11, 12). For the inhibition of 31 under co-incubation
conditions, increasing opening rates perfectly correlated with increasing
inhibition for 12 > 15 > 3 (Figure C, empty
circles).
The same correlation was observed for the inhibition of CTO 28 by 11 > 12 under co-incubation
conditions (Figure C, empty diamonds).Monomeric and dimeric CTOs 4 and 33–44 reliably inhibited the
uptake of ETP 31 and
CTO 28 with significant variations. With increasing hydrophobicity
and bolaamphiphilicity, detection of the activity at higher concentrations
could become problematic due to inhibitor self-assembly and precipitation.
This was also true for the most important dimers 4 and 33, which were inactive at >10 μM. However, focused
re-evaluation at low concentrations under co-incubation conditions
revealed dimers 4 and 33 among the best
inhibitors of the cytosolic delivery with transporter 28 (entries 13, 14), which was consistent with their ability to inhibit
the entry of SARS-CoV-2 (SC2) lentivector best (vide infra).Ebselen 46, a reported SC2 antiviral,[80−82] efficiently inhibited the cytosolic delivery of ETP 31 (entry 29). The better soluble, more amphiphilic ebselen analog 45 was even more powerful (entries 20, 21). The amphiphilic
ebselen 45 also inhibited the cytosolic delivery of CTO 28 but not OPS 32 (entries 22, 23, Figure ). OPS 32 was
best inhibited by the irreversible hypervalent iodine reagent 49 (entry 35, Figure ).[52,79] Like CTOs “self-inhibiting”
CTO 28, the cytosolic delivery of ETP 31 was best self-inhibited with ETPs, with the expanded tetrasulfide 47 being most interesting (entry 30). The resulting heatmap
showed strong contrasts, powerful self-inhibition, and different top
inhibitors for all transporters (Figure ). The orthogonal selectivities for inhibiting
CTO, OPS, and ETP transporters supported the emerging concept of thiol-mediated
uptake as a complex dynamic covalent network involving different pathways
with multiple cellular partners. Compared to lentivector uptake inhibition
(vide infra), CTO 28 correlated best,
whereas OPS 32 was perfectly orthogonal (Figure ). Inhibition of CTO 28 could thus possibly become best to predict lentivector
uptake inhibition.
Figure 8
Minimalist heatmap for transporters 28, 31, 32, and SC2 and inhibitors 3, 45, 47, and 49 (with MICs
in μM and
qualitative inhibition of SC2 uptake, from Tables and 3). −:
inactive, R, R′, A: Figure . For transporter inhibition, data used are for pre-incubation
conditions.
Minimalist heatmap for transporters 28, 31, 32, and SC2 and inhibitors 3, 45, 47, and 49 (with MICs
in μM and
qualitative inhibition of SC2 uptake, from Tables and 3). −:
inactive, R, R′, A: Figure . For transporter inhibition, data used are for pre-incubation
conditions.Taken together, the inhibition
of CTO 28 uptake by
a wide variety of CAX implies that it enters the cytosol through thiol-mediated
uptake, while passive diffusion can be excluded at this point. CTOs
with faster exchange kinetics give better MICs. With other factors
such as self-assembly and precipitation contributing to results and
producing unconventional dose response, inactivity of inhibitor candidates
should not be overinterpreted. It could only mean that the right conditions
to observe inhibition have not been found. This is particularly true
for hydrophobic, amphiphilic, and bolaamphiphilic inhibitors. What
matters for interpretation are positive results for successful inhibition.
Inhibitors of Lentivector Uptake
To elucidate the potential
of CTOs to inhibit viral entry, they were incubated with A549 human
lung alveolar basal epithelial cells overexpressing ACE2 and TMPRSS2[83] for 1 h. Then, incubation was continued for
6 h in the presence of lentivirus expressing the SC2 spike protein
with D614G mutation and coding for a luciferase reporter (Tables and S12). Earlier, we reported the ≈60% inhibition
of luciferase expression, thus SC2 lentivector entry (VE), by 50 μM
CTO 3 (Table , entry 8).[51] At 10 μM, however,
CTO 3 was inactive (Figure A,B, circles). Consistent with much higher
reactivity (Figure A), carbonate 11 was more active at 50 and 10 μM
(entry 3). Hill analysis of these dose responses (Figure B, circles vs diamonds) indicated
that 11 is about twice as active as 3, and
the activities are cooperative (Hill coefficient n ≈ 3), i.e., multiple exchanges are needed to inhibit the
vector entry. Although meaningful, these implications are based on
a few data points and thus should not be overinterpreted. Carbonate 11 was not further pursued because high reactivity coincided
with poor stability (Figure A,J), and 34 showed similarly high activity without
stability issues (entry 4, Figure B, triangles). Compared to 34, acylated
and cationic CTOs 36, 38, and 39 were less active, and 38 also suffered from the onset
of toxicity, possibly due to its amphiphilicity (entries 7, 10, 11, Figure A). These results
agreed with the concept of aproticity-enhanced reactivity (Figures D and 3D).
Figure 9
(A) Normalized VE (gray columns) and RV (filled diamonds) upon
treatment with monomers at 50 μM and dimers at 10 μM.
(B) Normalized dose–response curves of VE inhibition by 3 (brown circles), 4 (maroon squares), 11 (orange diamonds), 34 (olive triangles), and 35 (green crosses). (C) Comparison of VE (filled symbols:
10 μM inhibitor; empty symbols: 50 μM inhibitor) and the
MICs of transporter entry under co-incubation conditions (green circles:
ETP 31; purple diamonds: CTO 28).
(A) Normalized VE (gray columns) and RV (filled diamonds) upon
treatment with monomers at 50 μM and dimers at 10 μM.
(B) Normalized dose–response curves of VE inhibition by 3 (brown circles), 4 (maroon squares), 11 (orange diamonds), 34 (olive triangles), and 35 (green crosses). (C) Comparison of VE (filled symbols:
10 μM inhibitor; empty symbols: 50 μM inhibitor) and the
MICs of transporter entry under co-incubation conditions (green circles:
ETP 31; purple diamonds: CTO 28).From normalized luminescence intensity
of A549 human lung alveolar basal epithelium cells overexpressing
ACE2 and TMPRSS2 after incubation withinhibitor candidates atconcentrations c (1 h) and lentivirus
with D614G SC2 spike protein (6 h), followed
by 3 days for luciferase expression, reported asvector entry (VE) in % (n = 3,
±SD).RV: Relative
cell viability. SD
≤ 10%.SD > 10%.As anticipated from the cooperativity
discussed above, multivalent
inhibitors were proven more powerful (Figure E). CTO 4 inhibited SC2 lentivector
entry with an IC50 ∼10 μM (entry 1, Figure B, squares). Less
cooperative dose response implied that 4 occupies multiple
binding sites of target proteins through both CTOs to elicit its inhibitory
activity. Higher concentrations beyond 10 μM did not lead to
increased inhibition because of the onset of self-assembly of the
bolaamphiphile 4 in this assay, perhaps followed by precipitation
and/or ring-opening polymerization. This high concentration effect
was as previously observed in the screening of thiol-mediated uptake
inhibitors, also with the popular Ellman reagent 16.[51,79]The de-silylated dimer 41 was inactive at 5 μM
(entry 15), i.e., around the IC50 of dimer 4 (entry 1, Figure A). This result echoed the poorer activity of transporter 29 compared to 28 (Figure ). Both comparisons supported the concept of hydrophobic
directing groups to exchange with cellular thiols in hydrophobic pockets
and shield the released sulfinate from inactivation by hydrogen bonding
(Figures D, 3D, and 4B). Consistent with
this interpretation, replacement of the TBS groups with benzyls in 33 was tolerated with negligible losses in activity at 10
μM (entry 2, Figure A). However, further structural modifications were not accepted,
supporting the involvement of quite specific molecular recognition.
This included, disappointingly, trimer 42, dimer 44 with a central alkyne for further derivatization, and dimer 35 with a shortened spacer (entries 5, 19, 21, Figure A). The steep dose response
of the urea dimer 35 with high activity at 50 μM
and inactivity at 10 μM suggested that its short linker hinders
the divalent binding to cellular targets (Figure B, crosses). The inactivity of monomer 43 further supported that both CTOs in dimers 4 and 33 are necessary and that simple partitioning effects
are not decisive for activity (entry 20, Figure E).Among other types of inhibitors
tested, ring-opened CTOs 37 and 40 showed
activities similar to the original 3, suggesting that
these linear compounds are in equilibrium
with CTOs, which are the active form (entries 9, 12). Ebselen 46, an SC2 antiviral candidate,[80−82] was at 50 μM more
toxic than active as an inhibitor of SC2 lentivector entry (entry
13, Figure A). The
more hydrophilic, anionic ebselen analogue 45 was more
active and nontoxic at 50 μM (entry 6). The hypervalent iodine
reagent 49 is an irreversible covalent thiol-reactive
agent, and was the most active inhibitor of cytosolic delivery of
OPS 32 but less powerful against ETP 31(79) and particularly CTO 28 (Figure ). The covalent reagent 49 did not inhibit SC2 entry at 5 μM, i.e., around the
IC50 of dimers 4 and 33 (entry
17). It even slightly enhanced SC2 entry, which is not an unusual
phenomenon associated with membrane disturbing activity at the onset
of cytotoxicity. The inactivity of the irreversible covalent thiol-reactive
agent 49 could further support the importance of exchange
cascades to inhibit SC2 lentivector entry and the existence of orthogonal
exchange network coding for thiol-mediated uptake (Figure ).Similar trends were
found for super-cinnamaldehyde 48 (Figure ). Introduced
to react with thiols in the pain receptor TRPA1,[84] super-cinnamaldehyde 48 was identified as
one of the most efficient inhibitors of the cytosolic delivery with
ETP 31 (Table , entry 33).[52,79] For SC2 vector entry, weak activation
rather than inhibition was found at 5 μM (Table , entry 16). Also poorly active was ETP-S447, the other most potent inhibitor of ETP 31 and also OPS 32 entry (Figure , Table , entry 14). Ellman’s reagent 16, finally, has been confirmed previously as a very poor inhibitor
of cytosolic delivery by thiol-mediated uptake with all tested transporters[51] but early on proposed as an inhibitor of thiol-mediated
entry of HIV.[61] For SC2 entry, the result
was as for controls 48 and 49, that is weak
activation rather than inhibition at 5 μM (entry 18). Thus overall,
inhibitory activities against vector entry correlated well with that
against CTO transporter 28, but poorly against ETP transporter 31 (Figures and 9C). Taken together, the inactive controls 16, 47–49 all supported the
potential of CTOs, particularly dimers, to inhibit SC2 lentivector
entry as well as the importance of exchange cascades and hydrophobic
directing groups for this activity.Many active compounds in
thiol-mediated uptake as transporters
or inhibitors are also known to act on other sites. Like paxlovid,[85] ebselen is a cysteine protease inhibitor[82] while CTOs have been associated with EGFR and
zinc fingers.[49,86] Preliminary results indicated
that dimer 4 at 10 μM inhibits trypsin by >80%
but neither cathepsin L nor B; at 50 μM, 3 inhibits
trypsin and cathepsin B but not L, 12, 34, and 35 inhibit only cathepsin B (not shown).Ultimately, multitarget activity[80] to
a certain extent will be common to all dynamic covalent inhibitor
candidates tested. However, the objective of this study was not to
identify alternative targets but to elaborate on the correlation of
the inhibition of SC2 lentivector entry on the one hand and thiol-mediated
cytosolic delivery on the other. A high number of compounds capable
of doing both has been identified. The future will tell if this is
a coincidence or more. Thiol-mediated uptake has so far received little
attention with regard to SC2 entry. However, possibly thiol-mediated
processes in SC fusion have been reported,[87,88] and many membrane proteins have been associated with both processes,
most notably the TfR and Scarb1.[12,41,89,90] The identification
of top activities for CTO dimers argues against enzyme inhibition
and in favor of dynamic covalent exchange cascades with more than
one partner as mode of action. A heatmap with different inhibitors
for different transporters (Figure ) supports this emerging view of thiol-mediated uptake
as a complex network of general significance for cellular entry and
indicates that CTO transporters and SC2 might operate with the same
cellular partners.
Conclusions
The objective of this
study was to shift attention in thiol-mediated
uptake from disulfides to higher oxidation levels and introduce cyclic
thiosulfonates (CTOs) as well as to use the new cascade exchangers
(CAXs) to outline the unique chemical space accounting for thiol-mediated
uptake. The new CTOs are confirmed to act as transporters for cytosolic
delivery, inhibitors of the cytosolic delivery by thiol-mediated uptake,
including self-inhibition, and inhibitors of SC2 lentivector entry.
The most active transporters 28 are CTOs equipped with
hydrophobic directing groups. The most active inhibitors 4 and 33 are CTO dimers with the same hydrophobic directing
groups, followed by CTO monomer 11 with enhanced reactivity.In the light of these results, the most important lesson learned
is that CTO opening is fast and the resulting tethered sulfinates
continue to exchange with disulfides, preferably in aprotic environments.
This reactivity-based selectivity of CTOs called for the concept of
hydrophobic directing groups to bring the CTOs to the reactive disulfides.
This concept is unique among the CAXs known so far and should be of
interest also in the materials sciences.The second lesson learned
is that with the development of CTOs
as new CAXs, the number of dual inhibitors for cytosolic delivery
of thiol-mediated uptake and SC2 entry increases significantly. The
top activity of dimers with directing groups, i.e., 4 and 33, supports the involvement of dynamic covalent
exchange cascades.The third lesson learned concerns the comparison
of different transporters
with different inhibitors. The introduced minimalist heatmap shows
different inhibitors as best with different transporters. This finding
supports the emerging view of thiol-mediated uptake as a general complex
network encoding for more than one cellular partner and pathway to
bring matter into cells. A better understanding of this dynamic covalent
circuitry accounting for thiol-mediated uptake in the broadest sense
emerges as the most important and most demanding future challenge.
The introduction of both more CAXs and engineered cells for pattern
generation will likely be crucial for progress in this direction.Why is thiol-mediated uptake so useful in practice but so poorly
understood? Reasons might include the complexity and the dynamic nature
of the systems at work, and the large underexplored chemical space
covered. With CTOs as examples for newly emerging CAXs, we aimed here
to create awareness for this unique chemical space and outline as
many possible intertopical connectors as possible. Realized trends
correlate computed chalcogen bond length and ring-opening rates with
uptake inhibition efficiency (Figures A,E–I and 7C). As another
example, the concept of proticity control of CTOs is consistently
reflected in cascade exchange equilibria, cytosolic delivery, and
the inhibition of lentivector entry (Figures D, 3D, 4B, 5A–C, and 9). Considering the intertopical correlations between complex
systems involved, the three top inhibitors 4, 33, and 11 of lentivector uptake are overall remarkably
well rationalized by exchange velocity, directing groups, and divalency.
Nevertheless, not all intertopical correlations match that well, as
expected for the diverse parameters contributing to biological function.
It is thus understood that, despite all consistency, most intertopical
correlations found could ultimately turn out to be just coincidences.
In any case, the generally meaningful trends identified by these interconnections
support central concepts, enable new ones (e.g., reactivity-mediated
selectivity), and provide transporters 28 and inhibitors 4 and 33 with outstanding activity. Their likely
relevance will, hopefully, stimulate in-depth studies on the individual
topics involved and help direct future efforts to ultimately crack
thiol-mediated uptake.
Authors: W G Rice; D C Baker; C A Schaeffer; L Graham; M Bu; S Terpening; D Clanton; R Schultz; J P Bader; R W Buckheit; L Field; P K Singh; J A Turpin Journal: Antimicrob Agents Chemother Date: 1997-02 Impact factor: 5.191
Authors: Renan Barroso Ferreira; Mary Elizabeth Law; Stephan Christopher Jahn; Bradley John Davis; Coy Don Heldermon; Mary Reinhard; Ronald Keith Castellano; Brian Keith Law Journal: Oncotarget Date: 2015-04-30
Authors: Markus Hoffmann; Hannah Kleine-Weber; Simon Schroeder; Nadine Krüger; Tanja Herrler; Sandra Erichsen; Tobias S Schiergens; Georg Herrler; Nai-Huei Wu; Andreas Nitsche; Marcel A Müller; Christian Drosten; Stefan Pöhlmann Journal: Cell Date: 2020-03-05 Impact factor: 41.582
Authors: Amanda F Ghilardi; Elham Yaaghubi; Renan B Ferreira; Mary E Law; Yinuo Yang; Bradley J Davis; Christopher M Schilson; Ion Ghiviriga; Adrian E Roitberg; Brian K Law; Ronald K Castellano Journal: ChemMedChem Date: 2022-05-23 Impact factor: 3.540