Literature DB >> 26109598

Genetic instability in budding and fission yeast-sources and mechanisms.

Adrianna Skoneczna1, Aneta Kaniak2, Marek Skoneczny3.   

Abstract

Cells are constantly confronted with endogenous and exogenous factors that affect their genomes. Eons of evolution have allowed the cellular mechanisms responsible for preserving the genome to adjust for achieving contradictory objectives: to maintain the genome unchanged and to acquire mutations that allow adaptation to environmental changes. One evolutionary mechanism that has been refined for survival is genetic variation. In this review, we describe the mechanisms responsible for two biological processes: genome maintenance and mutation tolerance involved in generations of genetic variations in mitotic cells of both Saccharomyces cerevisiae and Schizosaccharomyces pombe. These processes encompass mechanisms that ensure the fidelity of replication, DNA lesion sensing and DNA damage response pathways, as well as mechanisms that ensure precision in chromosome segregation during cell division. We discuss various factors that may influence genome stability, such as cellular ploidy, the phase of the cell cycle, transcriptional activity of a particular region of DNA, the proficiency of DNA quality control systems, the metabolic stage of the cell and its respiratory potential, and finally potential exposure to endogenous or environmental stress. © FEMS 2015.

Entities:  

Keywords:  aneuploidy; dNTP pool; fidelity of replication; homologous recombination; mitochondrial genome maintenance; transcription-associated genome instability

Mesh:

Year:  2015        PMID: 26109598      PMCID: PMC4608483          DOI: 10.1093/femsre/fuv028

Source DB:  PubMed          Journal:  FEMS Microbiol Rev        ISSN: 0168-6445            Impact factor:   16.408


  575 in total

1.  Widespread aneuploidy revealed by DNA microarray expression profiling.

Authors:  T R Hughes; C J Roberts; H Dai; A R Jones; M R Meyer; D Slade; J Burchard; S Dow; T R Ward; M J Kidd; S H Friend; M J Marton
Journal:  Nat Genet       Date:  2000-07       Impact factor: 38.330

Review 2.  Monitoring the fidelity of mitotic chromosome segregation by the spindle assembly checkpoint.

Authors:  P Silva; J Barbosa; A V Nascimento; J Faria; R Reis; H Bousbaa
Journal:  Cell Prolif       Date:  2011-10       Impact factor: 6.831

3.  Abasic sites in the transcribed strand of yeast DNA are removed by transcription-coupled nucleotide excision repair.

Authors:  Nayun Kim; Sue Jinks-Robertson
Journal:  Mol Cell Biol       Date:  2010-04-26       Impact factor: 4.272

Review 4.  Genetic control of microsatellite stability.

Authors:  E A Sia; S Jinks-Robertson; T D Petes
Journal:  Mutat Res       Date:  1997-01-31       Impact factor: 2.433

5.  Expression of the Saccharomyces cerevisiae gene YME1 in the petite-negative yeast Schizosaccharomyces pombe converts it to petite-positive.

Authors:  D J Kominsky; P E Thorsness
Journal:  Genetics       Date:  2000-01       Impact factor: 4.562

Review 6.  Mutations arising during repair of chromosome breaks.

Authors:  Anna Malkova; James E Haber
Journal:  Annu Rev Genet       Date:  2012       Impact factor: 16.830

7.  Association of the yeast DNA helicase Pif1p with mitochondrial membranes and mitochondrial DNA.

Authors:  Xin Cheng; Andreas S Ivessa
Journal:  Eur J Cell Biol       Date:  2010-07-23       Impact factor: 4.492

8.  RNase H2-initiated ribonucleotide excision repair.

Authors:  Justin L Sparks; Hyongi Chon; Susana M Cerritelli; Thomas A Kunkel; Erik Johansson; Robert J Crouch; Peter M Burgers
Journal:  Mol Cell       Date:  2012-08-02       Impact factor: 17.970

9.  Bub1, Sgo1, and Mps1 mediate a distinct pathway for chromosome biorientation in budding yeast.

Authors:  Zuzana Storchová; Justin S Becker; Nicolas Talarek; Sandra Kögelsberger; David Pellman
Journal:  Mol Biol Cell       Date:  2011-03-09       Impact factor: 4.138

10.  Architecture and assembly of poly-SUMO chains on PCNA in Saccharomyces cerevisiae.

Authors:  Hanna Windecker; Helle D Ulrich
Journal:  J Mol Biol       Date:  2007-12-08       Impact factor: 5.469

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  23 in total

Review 1.  Ploidy Variation in Fungi: Polyploidy, Aneuploidy, and Genome Evolution.

Authors:  Robert T Todd; Anja Forche; Anna Selmecki
Journal:  Microbiol Spectr       Date:  2017-07

2.  Mutations in the S-Adenosylmethionine Synthetase Genes SAM1 and SAM2 Differentially Affect Genome Stability in Saccharomyces cerevisiae.

Authors:  Kellyn M Hoffert; Kathryn S P Higginbotham; Justin T Gibson; Stuart Oehrle; Erin D Strome
Journal:  Genetics       Date:  2019-07-18       Impact factor: 4.562

Review 3.  Tips, Tricks, and Potential Pitfalls of CRISPR Genome Editing in Saccharomyces cerevisiae.

Authors:  Jacob S Antony; John M Hinz; John J Wyrick
Journal:  Front Bioeng Biotechnol       Date:  2022-05-30

4.  The genome-wide rate and spectrum of spontaneous mutations differ between haploid and diploid yeast.

Authors:  Nathaniel P Sharp; Linnea Sandell; Christopher G James; Sarah P Otto
Journal:  Proc Natl Acad Sci U S A       Date:  2018-05-14       Impact factor: 11.205

5.  Depletion of the Origin Recognition Complex Subunits Delays Aging in Budding Yeast.

Authors:  Karolina Stępień; Adrianna Skoneczna; Monika Kula-Maximenko; Łukasz Jurczyk; Mateusz Mołoń
Journal:  Cells       Date:  2022-04-07       Impact factor: 7.666

Review 6.  POLD1: Central mediator of DNA replication and repair, and implication in cancer and other pathologies.

Authors:  Emmanuelle Nicolas; Erica A Golemis; Sanjeevani Arora
Journal:  Gene       Date:  2016-06-16       Impact factor: 3.688

7.  Continuous crossbreeding of sake yeasts using growth selection systems for a-type and α-type cells.

Authors:  Nobuo Fukuda; Misato Kaishima; Jun Ishii; Akihiko Kondo; Shinya Honda
Journal:  AMB Express       Date:  2016-07-08       Impact factor: 3.298

8.  Mutations in the Non-Catalytic Subunit Dpb2 of DNA Polymerase Epsilon Affect the Nrm1 Branch of the DNA Replication Checkpoint.

Authors:  Michał Dmowski; Justyna Rudzka; Judith L Campbell; Piotr Jonczyk; Iwona J Fijałkowska
Journal:  PLoS Genet       Date:  2017-01-20       Impact factor: 5.917

Review 9.  Mitotic recombination in yeast: what we know and what we don't know.

Authors:  Sue Jinks-Robertson; Thomas D Petes
Journal:  Curr Opin Genet Dev       Date:  2021-07-24       Impact factor: 5.578

10.  Chromosomal Translocations in the Parasite Leishmania by a MRE11/RAD50-Independent Microhomology-Mediated End Joining Mechanism.

Authors:  Marie-Claude N Laffitte; Philippe Leprohon; Maripier Hainse; Danielle Légaré; Jean-Yves Masson; Marc Ouellette
Journal:  PLoS Genet       Date:  2016-06-17       Impact factor: 5.917

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