Literature DB >> 28752816

Ploidy Variation in Fungi: Polyploidy, Aneuploidy, and Genome Evolution.

Robert T Todd1, Anja Forche2, Anna Selmecki1.   

Abstract

The ability of an organism to replicate and segregate its genome with high fidelity is vital to its survival and for the production of future generations. Errors in either of these steps (replication or segregation) can lead to a change in ploidy or chromosome number. While these drastic genome changes can be detrimental to the organism, resulting in decreased fitness, they can also provide increased fitness during periods of stress. A change in ploidy or chromosome number can fundamentally change how a cell senses and responds to its environment. Here, we discuss current ideas in fungal biology that illuminate how eukaryotic genome size variation can impact the organism at a cellular and evolutionary level. One of the most fascinating observations from the past 2 decades of research is that some fungi have evolved the ability to tolerate large genome size changes and generate vast genomic heterogeneity without undergoing canonical meiosis.

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Year:  2017        PMID: 28752816      PMCID: PMC5656283          DOI: 10.1128/microbiolspec.FUNK-0051-2016

Source DB:  PubMed          Journal:  Microbiol Spectr        ISSN: 2165-0497


  171 in total

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Review 4.  The advantages and disadvantages of being polyploid.

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Journal:  Nat Rev Genet       Date:  2005-11       Impact factor: 53.242

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Journal:  Mutat Res       Date:  1990-08       Impact factor: 2.433

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7.  High resolution analysis of DNA copy number variation using comparative genomic hybridization to microarrays.

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Journal:  Nat Genet       Date:  1998-10       Impact factor: 38.330

8.  Diploid-specific [corrected] genome stability genes of S. cerevisiae: genomic screen reveals haploidization as an escape from persisting DNA rearrangement stress.

Authors:  Malgorzata Alabrudzinska; Marek Skoneczny; Adrianna Skoneczna
Journal:  PLoS One       Date:  2011-06-17       Impact factor: 3.240

9.  Meiosis drives extraordinary genome plasticity in the haploid fungal plant pathogen Mycosphaerella graminicola.

Authors:  Alexander H J Wittenberg; Theo A J van der Lee; Sarrah Ben M'barek; Sarah B Ware; Stephen B Goodwin; Andrzej Kilian; Richard G F Visser; Gert H J Kema; Henk J Schouten
Journal:  PLoS One       Date:  2009-06-10       Impact factor: 3.240

10.  Acquisition of aneuploidy provides increased fitness during the evolution of antifungal drug resistance.

Authors:  Anna M Selmecki; Keely Dulmage; Leah E Cowen; James B Anderson; Judith Berman
Journal:  PLoS Genet       Date:  2009-10-30       Impact factor: 5.917

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  24 in total

1.  Metabolism-induced oxidative stress and DNA damage selectively trigger genome instability in polyploid fungal cells.

Authors:  Gregory J Thomson; Claire Hernon; Nicanor Austriaco; Rebecca S Shapiro; Peter Belenky; Richard J Bennett
Journal:  EMBO J       Date:  2019-08-26       Impact factor: 11.598

2.  Experimental Evolution Identifies Adaptive Aneuploidy as a Mechanism of Fluconazole Resistance in Candida auris.

Authors:  Jian Bing; Tianren Hu; Qiushi Zheng; José F Muñoz; Christina A Cuomo; Guanghua Huang
Journal:  Antimicrob Agents Chemother       Date:  2020-12-16       Impact factor: 5.191

3.  Flow Cytometry Analysis of Fungal Ploidy.

Authors:  Robert T Todd; Ann L Braverman; Anna Selmecki
Journal:  Curr Protoc Microbiol       Date:  2018-07-20

4.  Inferring Variation in Copy Number Using High Throughput Sequencing Data in R.

Authors:  Brian J Knaus; Niklaus J Grünwald
Journal:  Front Genet       Date:  2018-04-13       Impact factor: 4.599

5.  Expandable and reversible copy number amplification drives rapid adaptation to antifungal drugs.

Authors:  Robert T Todd; Anna Selmecki
Journal:  Elife       Date:  2020-07-20       Impact factor: 8.140

6.  Diverse Lineages of Candida albicans Live on Old Oaks.

Authors:  Douda Bensasson; Jo Dicks; John M Ludwig; Christopher J Bond; Adam Elliston; Ian N Roberts; Stephen A James
Journal:  Genetics       Date:  2018-11-21       Impact factor: 4.562

7.  Activation of transposable elements and genetic instability during long-term culture of the human fungal pathogen Candida albicans.

Authors:  Leszek Potocki; Ewelina Kuna; Kamila Filip; Beata Kasprzyk; Anna Lewinska; Maciej Wnuk
Journal:  Biogerontology       Date:  2019-04-15       Impact factor: 4.277

8.  Genomic evidence for intraspecific hybridization in a clonal and extremely halotolerant yeast.

Authors:  Cene Gostinčar; Jason E Stajich; Jerneja Zupančič; Polona Zalar; Nina Gunde-Cimerman
Journal:  BMC Genomics       Date:  2018-05-15       Impact factor: 3.969

9.  Characterization of phenotypic variation and genome aberrations observed among Phytophthora ramorum isolates from diverse hosts.

Authors:  Marianne Elliott; Jennifer Yuzon; Mathu Malar C; Sucheta Tripathy; Mai Bui; Gary A Chastagner; Katie Coats; David M Rizzo; Matteo Garbelotto; Takao Kasuga
Journal:  BMC Genomics       Date:  2018-05-02       Impact factor: 3.969

Review 10.  Advances in understanding the evolution of fungal genome architecture.

Authors:  Shelby J Priest; Vikas Yadav; Joseph Heitman
Journal:  F1000Res       Date:  2020-07-27
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