Literature DB >> 26098866

Loss-of-function variants in ATM confer risk of gastric cancer.

Hannes Helgason1, Thorunn Rafnar2, Halla S Olafsdottir3, Jon G Jonasson4, Asgeir Sigurdsson2, Simon N Stacey2, Adalbjorg Jonasdottir2, Laufey Tryggvadottir5, Kristin Alexiusdottir3, Asgeir Haraldsson6, Louise le Roux2, Julius Gudmundsson2, Hrefna Johannsdottir2, Asmundur Oddsson2, Arnaldur Gylfason2, Olafur T Magnusson2, Gisli Masson2, Thorvaldur Jonsson7, Halla Skuladottir8, Daniel F Gudbjartsson1, Unnur Thorsteinsdottir9, Patrick Sulem2, Kari Stefansson9.   

Abstract

Gastric cancer is a serious health problem worldwide, with particularly high prevalence in eastern Asia. Genome-wide association studies (GWAS) in Asian populations have identified several loci that associate with gastric cancer risk. Here we report a GWAS of gastric cancer in a European population, using information on 2,500 population-based gastric cancer cases and 205,652 controls. We found a new gastric cancer association with loss-of-function mutations in ATM (gene test, P = 8.0 × 10(-12); odds ratio (OR) = 4.74). The combination of the loss-of-function variants p.Gln852*, p.Ser644* and p.Tyr103* (combined minor allele frequency (MAF) = 0.3%) also associates with pancreatic and prostate cancers (OR = 3.81 and 2.18, respectively) and gives an indication of risk of breast and colorectal cancers (OR = 1.82 and 1.97, respectively). Cancers in those carrying loss-of-function ATM mutations are diagnosed at a significantly earlier age than in non-carriers. Our results confirm an association between gastric cancer in Europeans and three loci previously reported in Asians, MUC1, PRKAA1 and PSCA, refine the association signal at PRKAA1 and support a pathogenic role for the tandem repeat identified in MUC1.

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Year:  2015        PMID: 26098866     DOI: 10.1038/ng.3342

Source DB:  PubMed          Journal:  Nat Genet        ISSN: 1061-4036            Impact factor:   38.330


  36 in total

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Journal:  Nat Genet       Date:  2015-03-25       Impact factor: 38.330

3.  Data quality at the Icelandic Cancer Registry: comparability, validity, timeliness and completeness.

Authors:  Lara Gudrun Sigurdardottir; Jon Gunnlaugur Jonasson; Sigrun Stefansdottir; Anna Jonsdottir; Gudridur Helga Olafsdottir; Elinborg Jona Olafsdottir; Laufey Tryggvadottir
Journal:  Acta Oncol       Date:  2012-09       Impact factor: 4.089

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Journal:  Proc Natl Acad Sci U S A       Date:  2011-09-06       Impact factor: 11.205

6.  A comprehensive analysis of common genetic variation in MUC1, MUC5AC, MUC6 genes and risk of stomach cancer.

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Journal:  Cancer Causes Control       Date:  2010-02       Impact factor: 2.506

Review 7.  Gastric cancer: epidemiology and risk factors.

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Journal:  Int J Cancer       Date:  2014-10-09       Impact factor: 7.396

9.  Detection of sharing by descent, long-range phasing and haplotype imputation.

Authors:  Augustine Kong; Gisli Masson; Michael L Frigge; Arnaldur Gylfason; Pasha Zusmanovich; Gudmar Thorleifsson; Pall I Olason; Andres Ingason; Stacy Steinberg; Thorunn Rafnar; Patrick Sulem; Magali Mouy; Frosti Jonsson; Unnur Thorsteinsdottir; Daniel F Gudbjartsson; Hreinn Stefansson; Kari Stefansson
Journal:  Nat Genet       Date:  2008-09       Impact factor: 38.330

10.  Prostate stem-cell antigen gene is associated with diffuse and intestinal gastric cancer in Caucasians: results from the EPIC-EURGAST study.

Authors:  Núria Sala; Xavier Muñoz; Noemie Travier; Antonio Agudo; Eric J Duell; Víctor Moreno; Kim Overvad; Anne Tjonneland; Marie Christine Boutron-Ruault; Françoise Clavel-Chapelon; Federico Canzian; Rudolf Kaaks; Heiner Boeing; Karina Meidtner; Antonia Trichopoulos; Konstantine Tsiotas; Dimosthenis Zylis; Paolo Vineis; Salvatore Panico; Domenico Palli; Vittorio Krogh; Rosario Tumino; Eiliv Lund; H Bas Bueno-de-Mesquita; Mattjis E Numans; Petra H M Peeters; J Ramon Quirós; María-José Sánchez; Camen Navarro; Eva Ardanaz; Miren Dorronsoro; Göran Hallmans; Roger Stenling; Jonas Manjer; Naomi E Allen; Ruth C Travis; Kay-Tee Khaw; Mazda Jenab; G Johan A Offerhaus; Elio Riboli; Carlos A González
Journal:  Int J Cancer       Date:  2011-08-12       Impact factor: 7.396

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  56 in total

Review 1.  Genome-Wide Association Studies of Cancer in Diverse Populations.

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Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2017-06-21       Impact factor: 4.254

Review 2.  Resolving gastric cancer aetiology: an update in genetic predisposition.

Authors:  Paul C Lott; Luis G Carvajal-Carmona
Journal:  Lancet Gastroenterol Hepatol       Date:  2018-12

Review 3.  Racial Disparity in Gastrointestinal Cancer Risk.

Authors:  Hassan Ashktorab; Sonia S Kupfer; Hassan Brim; John M Carethers
Journal:  Gastroenterology       Date:  2017-08-12       Impact factor: 22.682

4.  Rare loss of function variants in candidate genes and risk of colorectal cancer.

Authors:  Elisabeth A Rosenthal; Brian H Shirts; Laura M Amendola; Martha Horike-Pyne; Peggy D Robertson; Fuki M Hisama; Robin L Bennett; Michael O Dorschner; Deborah A Nickerson; Ian B Stanaway; Rami Nassir; Kathy T Vickers; Christopher Li; William M Grady; Ulrike Peters; Gail P Jarvik
Journal:  Hum Genet       Date:  2018-09-28       Impact factor: 4.132

Review 5.  ATM, radiation, and the risk of second primary breast cancer.

Authors:  Jonine L Bernstein; Patrick Concannon
Journal:  Int J Radiat Biol       Date:  2017-07-27       Impact factor: 2.694

6.  A Clinical Decision Support Tool to Predict Cancer Risk for Commonly Tested Cancer-Related Germline Mutations.

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Journal:  J Genet Couns       Date:  2018-03-02       Impact factor: 2.537

7.  Multiplex H. pylori Serology and Risk of Gastric Cardia and Noncardia Adenocarcinomas.

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Journal:  Cancer Res       Date:  2015-09-17       Impact factor: 12.701

8.  Detection of Pathogenic Variants With Germline Genetic Testing Using Deep Learning vs Standard Methods in Patients With Prostate Cancer and Melanoma.

Authors:  Saud H AlDubayan; Jake R Conway; Sabrina Y Camp; Leora Witkowski; Eric Kofman; Brendan Reardon; Seunghun Han; Nicholas Moore; Haitham Elmarakeby; Keyan Salari; Hani Choudhry; Abdullah M Al-Rubaish; Abdulsalam A Al-Sulaiman; Amein K Al-Ali; Amaro Taylor-Weiner; Eliezer M Van Allen
Journal:  JAMA       Date:  2020-11-17       Impact factor: 56.272

9.  Germline variants of Brazilian women with breast cancer and detection of a novel pathogenic ATM deletion in early-onset breast cancer.

Authors:  Gabriel Bandeira; Katia Rocha; Monize Lazar; Suzana Ezquina; Guilherme Yamamoto; Monica Varela; Vanessa Takahashi; Meire Aguena; Thomaz Gollop; Mayana Zatz; Maria Rita Passos-Bueno; Ana Krepischi; Oswaldo Keith Okamoto
Journal:  Breast Cancer       Date:  2020-09-28       Impact factor: 4.239

10.  Association of BRCA2 K3326* With Small Cell Lung Cancer and Squamous Cell Cancer of the Skin.

Authors:  Thorunn Rafnar; Gudbjorg R Sigurjonsdottir; Simon N Stacey; Gisli Halldorsson; Patrick Sulem; Luba M Pardo; Hannes Helgason; Stefan T Sigurdsson; Thorkell Gudjonsson; Laufey Tryggvadottir; Gudridur H Olafsdottir; Jon G Jonasson; Kristin Alexiusdottir; Asgeir Sigurdsson; Julius Gudmundsson; Jona Saemundsdottir; Jon K Sigurdsson; Hrefna Johannsdottir; Andre Uitterlinden; Sita H Vermeulen; Tessel E Galesloot; Dawn C Allain; Martin Lacko; Bardur Sigurgeirsson; Kristin Thorisdottir; Oskar T Johannsson; Fridbjorn Sigurdsson; Gunnar B Ragnarsson; Helgi Isaksson; Hronn Hardardottir; Tomas Gudbjartsson; Daniel F Gudbjartsson; Gisli Masson; Lambertus A M L Kiemeney; Amanda Ewart Toland; Tamar Nijsten; Wilbert H M Peters; Jon H Olafsson; Steinn Jonsson; Unnur Thorsteinsdottir; Gudmar Thorleifsson; Kari Stefansson
Journal:  J Natl Cancer Inst       Date:  2018-09-01       Impact factor: 13.506

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