Literature DB >> 26097262

Computational studies of electronic circular dichroism spectra predict absolute configuration assignments for the guanine oxidation product 5-carboxamido-5-formamido-2-iminohydantoin.

Aaron M Fleming1, Omar Alshykhly1, Anita M Orendt2, Cynthia J Burrows1.   

Abstract

Oxidation of the guanine heterocycle by two electrons can yield the chiral product 5-carboxamido-5-formamido-2-iminohydantoin (2Ih). The 2Ih free base enantiomers were synthesized from 2'-deoxyguanosine oxidized with a Cu(II)/H2O2 oxidant system followed by hydrolysis of the N-glycosidic bond. These isomers were each studied by electronic circular dichroism spectroscopy for determination of their absolute configurations. Time-dependent density functional theory calculations of the expected spectra were completed in both the gas phase and with solvent modeling in order to interpret the experimental spectra and provide the absolute configuration assignments.

Entities:  

Keywords:  2-Iminohydantoin; Electronic Circular Dichroism; Guanine Oxidation; Time-dependent Density Functional Theory

Year:  2015        PMID: 26097262      PMCID: PMC4472374          DOI: 10.1016/j.tetlet.2014.12.052

Source DB:  PubMed          Journal:  Tetrahedron Lett        ISSN: 0040-4039            Impact factor:   2.415


  26 in total

1.  Oxidation of guanine and 8-oxo-7,8-dihydroguanine by carbonate radical anions: insight from oxygen-18 labeling experiments.

Authors:  Conor Crean; Nicholas E Geacintov; Vladimir Shafirovich
Journal:  Angew Chem Int Ed Engl       Date:  2005-08-12       Impact factor: 15.336

2.  Guanine oxidation: one- and two-electron reactions.

Authors:  Geneviève Pratviel; Bernard Meunier
Journal:  Chemistry       Date:  2006-08-07       Impact factor: 5.236

3.  Characterization of 2'-deoxyguanosine oxidation products observed in the Fenton-like system Cu(II)/H2O2/reductant in nucleoside and oligodeoxynucleotide contexts.

Authors:  Aaron M Fleming; James G Muller; Insun Ji; Cynthia J Burrows
Journal:  Org Biomol Chem       Date:  2011-03-29       Impact factor: 3.876

4.  A single nuclease-resistant linkage in DNA as a versatile tool for the characterization of DNA lesions: application to the guanine oxidative lesion "G+34" generated by metalloporphyrin/KHSO(5) reagent.

Authors:  Agnieszka Tomaszewska; Sophie Mourgues; Piotr Guga; Barbara Nawrot; Geneviève Pratviel
Journal:  Chem Res Toxicol       Date:  2012-10-12       Impact factor: 3.739

5.  Characterization of spiroiminodihydantoin as a product of one-electron oxidation of 8-Oxo-7,8-dihydroguanosine.

Authors:  W Luo; J G Muller; E M Rachlin; C J Burrows
Journal:  Org Lett       Date:  2000-03-09       Impact factor: 6.005

6.  Reconciliation of chemical, enzymatic, spectroscopic and computational data to assign the absolute configuration of the DNA base lesion spiroiminodihydantoin.

Authors:  Aaron M Fleming; Anita M Orendt; Yanan He; Judy Zhu; Rina K Dukor; Cynthia J Burrows
Journal:  J Am Chem Soc       Date:  2013-11-21       Impact factor: 15.419

7.  Iminohydantoin lesion induced in DNA by peracids and other epoxidizing oxidants.

Authors:  Wenjie Ye; R Sangaiah; Diana E Degen; Avram Gold; K Jayaraj; Karl M Koshlap; Gunnar Boysen; Jason Williams; Kenneth B Tomer; Viorel Mocanu; Nedyalka Dicheva; Carol E Parker; Roel M Schaaper; Louise M Ball
Journal:  J Am Chem Soc       Date:  2009-05-06       Impact factor: 15.419

8.  Absolute configurations of spiroiminodihydantoin and allantoin stereoisomers: comparison of computed and measured electronic circular dichroism spectra.

Authors:  Shuang Ding; Lei Jia; Alexander Durandin; Conor Crean; Alexander Kolbanovskiy; Vladimir Shafirovich; Suse Broyde; Nicholas E Geacintov
Journal:  Chem Res Toxicol       Date:  2009-06       Impact factor: 3.739

9.  Formation of 13C-, 15N-, and 18O-labeled guanidinohydantoin from guanosine oxidation with singlet oxygen. Implications for structure and mechanism.

Authors:  Yu Ye; James G Muller; Wenchen Luo; Charles L Mayne; Anthony J Shallop; Roger A Jones; Cynthia J Burrows
Journal:  J Am Chem Soc       Date:  2003-11-19       Impact factor: 15.419

10.  Lead(II)-catalyzed oxidation of guanine in solution studied with electrospray ionization mass spectrometry.

Authors:  Laura Banu; Voislav Blagojevic; Diethard K Bohme
Journal:  J Phys Chem B       Date:  2012-09-20       Impact factor: 2.991

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  6 in total

1.  Guanine oxidation product 5-carboxamido-5-formamido-2-iminohydantoin induces mutations when bypassed by DNA polymerases and is a substrate for base excision repair.

Authors:  Omar R Alshykhly; Aaron M Fleming; Cynthia J Burrows
Journal:  Chem Res Toxicol       Date:  2015-09-02       Impact factor: 3.739

Review 2.  Formation and processing of DNA damage substrates for the hNEIL enzymes.

Authors:  Aaron M Fleming; Cynthia J Burrows
Journal:  Free Radic Biol Med       Date:  2016-11-20       Impact factor: 7.376

3.  Interrogation of Base Pairing of the Spiroiminodihydantoin Diastereomers Using the α-Hemolysin Latch.

Authors:  Tao Zeng; Aaron M Fleming; Yun Ding; Henry S White; Cynthia J Burrows
Journal:  Biochemistry       Date:  2017-03-09       Impact factor: 3.162

4.  Rates of chemical cleavage of DNA and RNA oligomers containing guanine oxidation products.

Authors:  Aaron M Fleming; Omar Alshykhly; Judy Zhu; James G Muller; Cynthia J Burrows
Journal:  Chem Res Toxicol       Date:  2015-04-22       Impact factor: 3.739

5.  5-Carboxamido-5-formamido-2-iminohydantoin, in Addition to 8-oxo-7,8-Dihydroguanine, Is the Major Product of the Iron-Fenton or X-ray Radiation-Induced Oxidation of Guanine under Aerobic Reducing Conditions in Nucleoside and DNA Contexts.

Authors:  Omar R Alshykhly; Aaron M Fleming; Cynthia J Burrows
Journal:  J Org Chem       Date:  2015-07-01       Impact factor: 4.354

Review 6.  Excision of Oxidatively Generated Guanine Lesions by Competitive DNA Repair Pathways.

Authors:  Vladimir Shafirovich; Nicholas E Geacintov
Journal:  Int J Mol Sci       Date:  2021-03-07       Impact factor: 5.923

  6 in total

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