Literature DB >> 26085253

Mining the microbial dark matter.

Corie Lok1.   

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Year:  2015        PMID： 26085253     DOI： 10.1038/522270a

Source DB:  PubMed          Journal:  Nature        ISSN： 0028-0836            Impact factor:   49.962


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  11 in total

1.  Complete genome sequence of the Q-fever pathogen Coxiella burnetii.

Authors:  Rekha Seshadri; Ian T Paulsen; Jonathan A Eisen; Timothy D Read; Karen E Nelson; William C Nelson; Naomi L Ward; Hervé Tettelin; Tanja M Davidsen; Maureen J Beanan; Robert T Deboy; Sean C Daugherty; Lauren M Brinkac; Ramana Madupu; Robert J Dodson; Hoda M Khouri; Kathy H Lee; Heather A Carty; David Scanlan; Robert A Heinzen; Herbert A Thompson; James E Samuel; Claire M Fraser; John F Heidelberg
Journal:  Proc Natl Acad Sci U S A       Date:  2003-04-18       Impact factor: 11.205

2.  Genomic DNA amplification from a single bacterium.

Authors:  Arumugham Raghunathan; Harley R Ferguson; Carole J Bornarth; Wanmin Song; Mark Driscoll; Roger S Lasken
Journal:  Appl Environ Microbiol       Date:  2005-06       Impact factor: 4.792

3.  Host cell-free growth of the Q fever bacterium Coxiella burnetii.

Authors:  Anders Omsland; Diane C Cockrell; Dale Howe; Elizabeth R Fischer; Kimmo Virtaneva; Daniel E Sturdevant; Stephen F Porcella; Robert A Heinzen
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-25       Impact factor: 11.205

4.  Insights into the phylogeny and coding potential of microbial dark matter.

Authors:  Christian Rinke; Patrick Schwientek; Alexander Sczyrba; Natalia N Ivanova; Iain J Anderson; Jan-Fang Cheng; Aaron Darling; Stephanie Malfatti; Brandon K Swan; Esther A Gies; Jeremy A Dodsworth; Brian P Hedlund; George Tsiamis; Stefan M Sievert; Wen-Tso Liu; Jonathan A Eisen; Steven J Hallam; Nikos C Kyrpides; Ramunas Stepanauskas; Edward M Rubin; Philip Hugenholtz; Tanja Woyke
Journal:  Nature       Date:  2013-07-14       Impact factor: 49.962

5.  A new antibiotic kills pathogens without detectable resistance.

Authors:  Losee L Ling; Tanja Schneider; Aaron J Peoples; Amy L Spoering; Ina Engels; Brian P Conlon; Anna Mueller; Till F Schäberle; Dallas E Hughes; Slava Epstein; Michael Jones; Linos Lazarides; Victoria A Steadman; Douglas R Cohen; Cintia R Felix; K Ashley Fetterman; William P Millett; Anthony G Nitti; Ashley M Zullo; Chao Chen; Kim Lewis
Journal:  Nature       Date:  2015-01-07       Impact factor: 49.962

6.  Gene-targeted microfluidic cultivation validated by isolation of a gut bacterium listed in Human Microbiome Project's Most Wanted taxa.

Authors:  Liang Ma; Jungwoo Kim; Roland Hatzenpichler; Mikhail A Karymov; Nathaniel Hubert; Ira M Hanan; Eugene B Chang; Rustem F Ismagilov
Journal:  Proc Natl Acad Sci U S A       Date:  2014-06-25       Impact factor: 11.205

7.  An environmental bacterial taxon with a large and distinct metabolic repertoire.

Authors:  Micheal C Wilson; Tetsushi Mori; Christian Rückert; Agustinus R Uria; Maximilian J Helf; Kentaro Takada; Christine Gernert; Ursula A E Steffens; Nina Heycke; Susanne Schmitt; Christian Rinke; Eric J N Helfrich; Alexander O Brachmann; Cristian Gurgui; Toshiyuki Wakimoto; Matthias Kracht; Max Crüsemann; Ute Hentschel; Ikuro Abe; Shigeki Matsunaga; Jörn Kalinowski; Haruko Takeyama; Jörn Piel
Journal:  Nature       Date:  2014-01-29       Impact factor: 49.962

8.  Policy: An intergovernmental panel on antimicrobial resistance.

Authors:  Mark Woolhouse; Jeremy Farrar
Journal:  Nature       Date:  2014-05-29       Impact factor: 49.962

9.  A systematic analysis of biosynthetic gene clusters in the human microbiome reveals a common family of antibiotics.

Authors:  Mohamed S Donia; Peter Cimermancic; Christopher J Schulze; Laura C Wieland Brown; John Martin; Makedonka Mitreva; Jon Clardy; Roger G Linington; Michael A Fischbach
Journal:  Cell       Date:  2014-09-11       Impact factor: 41.582

10.  The "most wanted" taxa from the human microbiome for whole genome sequencing.

Authors:  Anthony A Fodor; Todd Z DeSantis; Kristine M Wylie; Jonathan H Badger; Yuzhen Ye; Theresa Hepburn; Ping Hu; Erica Sodergren; Konstantinos Liolios; Heather Huot-Creasy; Bruce W Birren; Ashlee M Earl
Journal:  PLoS One       Date:  2012-07-26       Impact factor: 3.240
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  43 in total

Review 1.  Antibacterial drug discovery in the resistance era.

Authors:  Eric D Brown; Gerard D Wright
Journal:  Nature       Date:  2016-01-21       Impact factor: 49.962

2.  High-Throughput Single-Cell Cultivation on Microfluidic Streak Plates.

Authors:  Cheng-Ying Jiang; Libing Dong; Jian-Kang Zhao; Xiaofang Hu; Chaohua Shen; Yuxin Qiao; Xinyue Zhang; Yapei Wang; Rustem F Ismagilov; Shuang-Jiang Liu; Wenbin Du
Journal:  Appl Environ Microbiol       Date:  2016-02-05       Impact factor: 4.792

Review 3.  Antibiotics in the clinical pipeline at the end of 2015.

Authors:  Mark S Butler; Mark At Blaskovich; Matthew A Cooper
Journal:  J Antibiot (Tokyo)       Date:  2016-06-29       Impact factor: 2.649

4.  Endless Resistance. Endless Antibiotics?

Authors:  Jed F Fisher; Shahriar Mobashery
Journal:  Medchemcomm       Date:  2015-11-03       Impact factor: 3.597

Review 5.  Genetic platforms for heterologous expression of microbial natural products.

Authors:  Jia Jia Zhang; Xiaoyu Tang; Bradley S Moore
Journal:  Nat Prod Rep       Date:  2019-06-14       Impact factor: 13.423

6.  A critical analysis of state-of-the-art metagenomics OTU clustering algorithms.

Authors:  Ashaq Hussain Bhat; Puniethaa Prabhu; Kalpana Balakrishnan
Journal:  J Biosci       Date:  2019-12       Impact factor: 1.826

7.  Multiplexed CRISPR/Cas9- and TAR-Mediated Promoter Engineering of Natural Product Biosynthetic Gene Clusters in Yeast.

Authors:  Hahk-Soo Kang; Zachary Charlop-Powers; Sean F Brady
Journal:  ACS Synth Biol       Date:  2016-06-10       Impact factor: 5.110

Review 8.  Cell-Free Exploration of the Natural Product Chemical Space.

Authors:  Jonathan W Bogart; Maria D Cabezas; Bastian Vögeli; Derek A Wong; Ashty S Karim; Michael C Jewett
Journal:  Chembiochem       Date:  2020-09-22       Impact factor: 3.164

Review 9.  Individuality, phenotypic differentiation, dormancy and 'persistence' in culturable bacterial systems: commonalities shared by environmental, laboratory, and clinical microbiology.

Authors:  Douglas Kell; Marnie Potgieter; Etheresia Pretorius
Journal:  F1000Res       Date:  2015-07-01

10.  A positive response of ginger root zone and rhizome development to suitable sowing depth.

Authors:  Yao Lv; Yanyan Li; Xiaohui Liu; Kun Xu
Journal:  Protoplasma       Date:  2021-06-02       Impact factor: 3.356
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