Literature DB >> 15933038

Genomic DNA amplification from a single bacterium.

Arumugham Raghunathan1, Harley R Ferguson, Carole J Bornarth, Wanmin Song, Mark Driscoll, Roger S Lasken.   

Abstract

Genomic DNA was amplified about 5 billion-fold from single, flow-sorted bacterial cells by the multiple displacement amplification (MDA) reaction, using phi 29 DNA polymerase. A 662-bp segment of the 16S rRNA gene could be accurately sequenced from the amplified DNA. MDA methods enable new strategies for studying non-culturable microorganisms.

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Year:  2005        PMID： 15933038      PMCID： PMC1151817          DOI： 10.1128/AEM.71.6.3342-3347.2005

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  7 in total

1.  Comprehensive human genome amplification using multiple displacement amplification.

Authors:  Frank B Dean; Seiyu Hosono; Linhua Fang; Xiaohong Wu; A Fawad Faruqi; Patricia Bray-Ward; Zhenyu Sun; Qiuling Zong; Yuefen Du; Jing Du; Mark Driscoll; Wanmin Song; Stephen F Kingsmore; Michael Egholm; Roger S Lasken
Journal:  Proc Natl Acad Sci U S A       Date:  2002-04-16       Impact factor: 11.205

2.  Rapid amplification of plasmid and phage DNA using Phi 29 DNA polymerase and multiply-primed rolling circle amplification.

Authors:  F B Dean; J R Nelson; T L Giesler; R S Lasken
Journal:  Genome Res       Date:  2001-06       Impact factor: 9.043

Review 3.  Whole genome amplification: abundant supplies of DNA from precious samples or clinical specimens.

Authors:  Roger S Lasken; Michael Egholm
Journal:  Trends Biotechnol       Date:  2003-12       Impact factor: 19.536

4.  Isothermal strand-displacement amplification applications for high-throughput genomics.

Authors:  John C Detter; Jamie M Jett; Susan M Lucas; Eileen Dalin; Andre R Arellano; Mei Wang; John R Nelson; Jarrod Chapman; Yunian Lou; Dan Rokhsar; Trevor L Hawkins; Paul M Richardson
Journal:  Genomics       Date:  2002-12       Impact factor: 5.736

5.  Whole genome analysis of genetic alterations in small DNA samples using hyperbranched strand displacement amplification and array-CGH.

Authors:  José M Lage; John H Leamon; Tanja Pejovic; Stefan Hamann; Michelle Lacey; Deborah Dillon; Richard Segraves; Bettina Vossbrinck; Antonio González; Daniel Pinkel; Donna G Albertson; Jose Costa; Paul M Lizardi
Journal:  Genome Res       Date:  2003-02       Impact factor: 9.043

6.  Isothermal whole genome amplification from single and small numbers of cells: a new era for preimplantation genetic diagnosis of inherited disease.

Authors:  Alan H Handyside; Mark D Robinson; Robert J Simpson; Mark B Omar; Marie-Anne Shaw; J Gedis Grudzinskas; Anthony Rutherford
Journal:  Mol Hum Reprod       Date:  2004-08-20       Impact factor: 4.025

7.  Unbiased whole-genome amplification directly from clinical samples.

Authors:  Seiyu Hosono; A Fawad Faruqi; Frank B Dean; Yuefen Du; Zhenyu Sun; Xiaohong Wu; Jing Du; Stephen F Kingsmore; Michael Egholm; Roger S Lasken
Journal:  Genome Res       Date:  2003-04-14       Impact factor: 9.043
  7 in total
  131 in total

1.  Performance assessment of a novel two-step multiple displacement amplification-PCR assay for detection of Mycobacterium tuberculosis complex in sputum specimens.

Authors:  Na Wu; Yuanyuan Zhang; Jun Fu; Ruifen Zhang; Lan Feng; Yongfei Hu; Xiaoliang Li; Na Lu; Xiuqin Zhao; Yuanlong Pan; Jing Li; Baoli Zhu; Kanglin Wan
Journal:  J Clin Microbiol       Date:  2012-01-18       Impact factor: 5.948

2.  Microarray-based analysis of subnanogram quantities of microbial community DNAs by using whole-community genome amplification.

Authors:  Liyou Wu; Xueduan Liu; Christopher W Schadt; Jizhong Zhou
Journal:  Appl Environ Microbiol       Date:  2006-07       Impact factor: 4.792

3.  Environmental whole-genome amplification to access microbial populations in contaminated sediments.

Authors:  Carl B Abulencia; Denise L Wyborski; Joseph A Garcia; Mircea Podar; Wenqiong Chen; Sherman H Chang; Hwai W Chang; David Watson; Eoin L Brodie; Terry C Hazen; Martin Keller
Journal:  Appl Environ Microbiol       Date:  2006-05       Impact factor: 4.792

4.  Multiple displacement amplification, a powerful tool for molecular genetic analysis of powdery mildew fungi.

Authors:  Dolores Fernández-Ortuño; Juan A Torés; Antonio de Vicente; Alejandro Pérez-García
Journal:  Curr Genet       Date:  2007-03       Impact factor: 3.886

5.  Detection of low-copy-number genomic DNA sequences in individual bacterial cells by using peptide nucleic acid-assisted rolling-circle amplification and fluorescence in situ hybridization.

Authors:  Irina Smolina; Charles Lee; Maxim Frank-Kamenetskii
Journal:  Appl Environ Microbiol       Date:  2007-02-09       Impact factor: 4.792

6.  Targeted access to the genomes of low-abundance organisms in complex microbial communities.

Authors:  Mircea Podar; Carl B Abulencia; Marion Walcher; Don Hutchison; Karsten Zengler; Joseph A Garcia; Trevin Holland; David Cotton; Loren Hauser; Martin Keller
Journal:  Appl Environ Microbiol       Date:  2007-03-16       Impact factor: 4.792

7.  Resolving genetic functions within microbial populations: in situ analyses using rRNA and mRNA stable isotope probing coupled with single-cell raman-fluorescence in situ hybridization.

Authors:  Wei E Huang; Andrew Ferguson; Andrew C Singer; Kathryn Lawson; Ian P Thompson; Robert M Kalin; Michael J Larkin; Mark J Bailey; Andrew S Whiteley
Journal:  Appl Environ Microbiol       Date:  2008-11-07       Impact factor: 4.792

8.  Preparation of genomic DNA from a single species of uncultured magnetotactic bacterium by multiple-displacement amplification.

Authors:  Atsushi Arakaki; Mie Shibusawa; Masahito Hosokawa; Tadashi Matsunaga
Journal:  Appl Environ Microbiol       Date:  2010-01-15       Impact factor: 4.792

9.  Predominant archaea in marine sediments degrade detrital proteins.

Authors:  Karen G Lloyd; Lars Schreiber; Dorthe G Petersen; Kasper U Kjeldsen; Mark A Lever; Andrew D Steen; Ramunas Stepanauskas; Michael Richter; Sara Kleindienst; Sabine Lenk; Andreas Schramm; Bo Barker Jørgensen
Journal:  Nature       Date:  2013-03-27       Impact factor: 49.962

Review 10.  Recent advances in genomic DNA sequencing of microbial species from single cells.

Authors:  Roger S Lasken; Jeffrey S McLean
Journal:  Nat Rev Genet       Date:  2014-08-05       Impact factor: 53.242
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