Literature DB >> 26066107

Scaling regimes of a semiflexible polymer in a rectangular channel.

E Werner1, B Mehlig1.   

Abstract

We derive scaling relations for the extension statistics and the confinement free energy for a semiflexible polymer confined to a channel with a rectangular cross section. Our motivation is recent numerical results [Gupta et al., J. Chem. Phys. 140, 214901 (2014)] indicating that extensional fluctuations are quite different in rectangular channels compared to square channels. Our results are of direct relevance for interpreting current experiments on DNA molecules confined to nanochannels, as many experiments are performed for rectangular channels with large aspect ratios, while theoretical and simulation results are usually obtained for square channels.

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Year:  2015        PMID: 26066107     DOI: 10.1103/PhysRevE.91.050601

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  11 in total

1.  Nanoplumbing with 2D Metamaterials.

Authors:  Saroj Dangi; Robert Riehn
Journal:  Small       Date:  2018-12-11       Impact factor: 13.281

2.  Hairpins in the conformations of a confined polymer.

Authors:  E Werner; A Jain; A Muralidhar; K Frykholm; T St Clere Smithe; J Fritzsche; F Westerlund; K D Dorfman; B Mehlig
Journal:  Biomicrofluidics       Date:  2018-03-09       Impact factor: 2.800

3.  Evaluation of Blob Theory for the Diffusion of DNA in Nanochannels.

Authors:  Damini Gupta; Aditya Bikram Bhandari; Kevin D Dorfman
Journal:  Macromolecules       Date:  2018-02-20       Impact factor: 5.985

4.  Macromolecule crowding effects on the phase separation of semi-flexible polymer in spherical confined space.

Authors:  Hongchang Wang; Lingyun Gu; Rongri Tan; Xiaotian Ma; Xun Zhou; Yanhui Liu
Journal:  J Biol Phys       Date:  2020-07-01       Impact factor: 1.365

5.  Limitations of the equivalent neutral polymer assumption for theories describing nanochannel-confined DNA.

Authors:  Aditya Bikram Bhandari; Kevin D Dorfman
Journal:  Phys Rev E       Date:  2020-01       Impact factor: 2.529

6.  The Statistical Segment Length of DNA: Opportunities for Biomechanical Modeling in Polymer Physics and Next-Generation Genomics.

Authors:  Kevin D Dorfman
Journal:  J Biomech Eng       Date:  2018-02-01       Impact factor: 2.097

7.  Finite-size corrections for confined polymers in the extended de Gennes regime.

Authors:  Toby St Clere Smithe; Vitalii Iarko; Abhiram Muralidhar; Erik Werner; Kevin D Dorfman; Bernhard Mehlig
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2015-12-17

8.  Odijk excluded volume interactions during the unfolding of DNA confined in a nanochannel.

Authors:  Jeffrey G Reifenberger; Han Cao; Kevin D Dorfman
Journal:  Macromolecules       Date:  2018-01-24       Impact factor: 5.985

9.  Evidence for the extended de Gennes regime of a semiflexible polymer in slit confinement.

Authors:  Guo Kang Cheong; Xiaolan Li; Kevin D Dorfman
Journal:  Phys Rev E       Date:  2018-02-08       Impact factor: 2.529

10.  One-Parameter Scaling Theory for DNA Extension in a Nanochannel.

Authors:  E Werner; G K Cheong; D Gupta; K D Dorfman; B Mehlig
Journal:  Phys Rev Lett       Date:  2017-12-28       Impact factor: 9.161

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