Literature DB >> 29479576

Evidence for the extended de Gennes regime of a semiflexible polymer in slit confinement.

Guo Kang Cheong1, Xiaolan Li1, Kevin D Dorfman1.   

Abstract

We use off-lattice, pruned-enriched Rosenbluth method (PERM) simulations to compute the confinement free energy of a real wormlike chain of effective width w and persistence length lp in a slit of height H. For slit heights much larger than the persistence length of the polymer and much smaller than the thermal blob size, the excess free energy of the confined chain is consistent with a modified version of the scaling theory for the extended de Gennes regime in a channel that reflects the blob statistics in slit confinement. Explicitly, for channel sizes [Formula: see text], the difference between the confinement free energy of the real chain and that of an ideal chain scales like w/H.

Entities:  

Year:  2018        PMID: 29479576      PMCID: PMC5823612          DOI: 10.1103/PhysRevE.97.022502

Source DB:  PubMed          Journal:  Phys Rev E        ISSN: 2470-0045            Impact factor:   2.529


  28 in total

1.  Dimensional reduction of duplex DNA under confinement to nanofluidic slits.

Authors:  Fernando Vargas-Lara; Samuel M Stavis; Elizabeth A Strychalski; Brian J Nablo; Jon Geist; Francis W Starr; Jack F Douglas
Journal:  Soft Matter       Date:  2015-11-14       Impact factor: 3.679

2.  Conformation and dynamics of single DNA molecules in parallel-plate slit microchannels.

Authors:  Y-L Chen; M D Graham; J J de Pablo; G C Randall; M Gupta; P S Doyle
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2004-12-13

3.  Static conformation and dynamics of single DNA molecules confined in nanoslits.

Authors:  Po-Keng Lin; Chi-Cheng Fu; Y-L Chen; Yan-Ru Chen; Pei-Kuen Wei; C H Kuan; W S Fann
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2007-07-23

4.  Ionic effects on the equilibrium dynamics of DNA confined in nanoslits.

Authors:  Chih-Chen Hsieh; Anthony Balducci; Patrick S Doyle
Journal:  Nano Lett       Date:  2008-05-07       Impact factor: 11.189

5.  Interactions of highly charged colloidal cylinders with applications to double-stranded.

Authors:  D Stigter
Journal:  Biopolymers       Date:  1977-07       Impact factor: 2.505

6.  Simulation of DNA Extension in Nanochannels.

Authors:  Yanwei Wang; Douglas R Tree; Kevin D Dorfman
Journal:  Macromolecules       Date:  2011-08-23       Impact factor: 5.985

7.  Semiflexible polymers confined in soft tubes.

Authors:  F Brochard-Wyart; T Tanaka; N Borghi; P-G de Gennes
Journal:  Langmuir       Date:  2005-04-26       Impact factor: 3.882

8.  Entropic elasticity of lambda-phage DNA.

Authors:  C Bustamante; J F Marko; E D Siggia; S Smith
Journal:  Science       Date:  1994-09-09       Impact factor: 47.728

9.  Extension of DNA in a nanochannel as a rod-to-coil transition.

Authors:  Douglas R Tree; Yanwei Wang; Kevin D Dorfman
Journal:  Phys Rev Lett       Date:  2013-05-13       Impact factor: 9.161

10.  Finite-size corrections for confined polymers in the extended de Gennes regime.

Authors:  Toby St Clere Smithe; Vitalii Iarko; Abhiram Muralidhar; Erik Werner; Kevin D Dorfman; Bernhard Mehlig
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2015-12-17
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  2 in total

1.  Topological Friction and Relaxation Dynamics of Spatially Confined Catenated Polymers.

Authors:  Giulia Amici; Michele Caraglio; Enzo Orlandini; Cristian Micheletti
Journal:  ACS Macro Lett       Date:  2021-12-13       Impact factor: 6.903

2.  Confinement anisotropy drives polar organization of two DNA molecules interacting in a nanoscale cavity.

Authors:  Zezhou Liu; Xavier Capaldi; Lili Zeng; Yuning Zhang; Rodrigo Reyes-Lamothe; Walter Reisner
Journal:  Nat Commun       Date:  2022-07-28       Impact factor: 17.694

  2 in total

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