Literature DB >> 30537130

Nanoplumbing with 2D Metamaterials.

Saroj Dangi1, Robert Riehn1.   

Abstract

Complex manipulations of DNA in a nanofluidic device require channels with branches and junctions. However, the dynamic response of DNA in such nanofluidic networks is relatively unexplored. Here, the transport of DNA in a 2D metamaterial made by arrays of nanochannel junctions is investigated. The mechanism of transport is explained as Brownian motion through an energy landscape formed by the combination of the confinement free energy of DNA and the effective potential of hydrodynamic flow, which both can be tuned independently within the device. For the quantitative understanding of DNA transport, a dynamic mean-field model of DNA at a nanochannel junction is proposed. It is shown that the dynamics of DNA in a nanofluidic device with branched channels and junctions is well described by the model.
© 2018 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  DNA; confined polymers; nanofluidics

Mesh:

Substances:

Year:  2018        PMID: 30537130      PMCID: PMC6785347          DOI: 10.1002/smll.201803478

Source DB:  PubMed          Journal:  Small        ISSN: 1613-6810            Impact factor:   13.281


  44 in total

1.  DNA dynamics in a microchannel.

Authors:  Richard M Jendrejack; Eileen T Dimalanta; David C Schwartz; Michael D Graham; Juan J de Pablo
Journal:  Phys Rev Lett       Date:  2003-07-15       Impact factor: 9.161

2.  Nanofluidic single-molecule sorting of DNA: a new concept in separation and analysis of biomolecules towards ultimate level performance.

Authors:  Takatoki Yamamoto; Teruo Fujii
Journal:  Nanotechnology       Date:  2010-09-01       Impact factor: 3.874

3.  Scaling theory of DNA confined in nanochannels and nanoslits.

Authors:  Theo Odijk
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2008-06-09

4.  Hydrodynamics of DNA confined in nanoslits and nanochannels.

Authors:  Kevin D Dorfman; Damini Gupta; Aashish Jain; Abhiram Muralidhar; Douglas R Tree
Journal:  Eur Phys J Spec Top       Date:  2014-12-01       Impact factor: 2.707

5.  Simulation of DNA Extension in Nanochannels.

Authors:  Yanwei Wang; Douglas R Tree; Kevin D Dorfman
Journal:  Macromolecules       Date:  2011-08-23       Impact factor: 5.985

6.  Kirkwood diffusivity of long semiflexible chains in nanochannel confinement.

Authors:  Abhiram Muralidhar; Kevin D Dorfman
Journal:  Macromolecules       Date:  2015-04-28       Impact factor: 5.985

7.  Confined polymers in the extended de Gennes regime.

Authors:  E Werner; B Mehlig
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2014-12-22

8.  Single molecule linear analysis of DNA in nano-channel labeled with sequence specific fluorescent probes.

Authors:  Somes K Das; Michael D Austin; Matthew C Akana; Paru Deshpande; Han Cao; Ming Xiao
Journal:  Nucleic Acids Res       Date:  2010-08-10       Impact factor: 16.971

9.  Model systems for single molecule polymer dynamics.

Authors:  Folarin Latinwo; Charles M Schroeder
Journal:  Soft Matter       Date:  2011-07-08       Impact factor: 3.679

10.  Rapid genome mapping in nanochannel arrays for highly complete and accurate de novo sequence assembly of the complex Aegilops tauschii genome.

Authors:  Alex R Hastie; Lingli Dong; Alexis Smith; Jeff Finklestein; Ernest T Lam; Naxin Huo; Han Cao; Pui-Yan Kwok; Karin R Deal; Jan Dvorak; Ming-Cheng Luo; Yong Gu; Ming Xiao
Journal:  PLoS One       Date:  2013-02-06       Impact factor: 3.240

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.