Literature DB >> 26057688

The ASTRA Toolbox: A platform for advanced algorithm development in electron tomography.

Wim van Aarle1, Willem Jan Palenstijn2, Jan De Beenhouwer3, Thomas Altantzis4, Sara Bals5, K Joost Batenburg6, Jan Sijbers7.   

Abstract

We present the ASTRA Toolbox as an open platform for 3D image reconstruction in tomography. Most of the software tools that are currently used in electron tomography offer limited flexibility with respect to the geometrical parameters of the acquisition model and the algorithms used for reconstruction. The ASTRA Toolbox provides an extensive set of fast and flexible building blocks that can be used to develop advanced reconstruction algorithms, effectively removing these limitations. We demonstrate this flexibility, the resulting reconstruction quality, and the computational efficiency of this toolbox by a series of experiments, based on experimental dual-axis tilt series.
Copyright © 2015 Elsevier B.V. All rights reserved.

Keywords:  ASTRA Toolbox; Dual-axis; Electron tomography; Reconstruction

Year:  2015        PMID: 26057688     DOI: 10.1016/j.ultramic.2015.05.002

Source DB:  PubMed          Journal:  Ultramicroscopy        ISSN: 0304-3991            Impact factor:   2.689


  83 in total

1.  Automated deep-phenotyping of the vertebrate brain.

Authors:  Amin Allalou; Yuelong Wu; Mostafa Ghannad-Rezaie; Peter M Eimon; Mehmet Fatih Yanik
Journal:  Elife       Date:  2017-04-13       Impact factor: 8.140

2.  Discrete tomography in an in vivo small animal bone study.

Authors:  Elke Van de Casteele; Egon Perilli; Wim Van Aarle; Karen J Reynolds; Jan Sijbers
Journal:  J Bone Miner Metab       Date:  2017-02-27       Impact factor: 2.626

3.  Tomosynthesis implementation with adaptive online calibration on clinical C-arm systems.

Authors:  Khanlian Chung; Lothar R Schad; Frank G Zöllner
Journal:  Int J Comput Assist Radiol Surg       Date:  2018-05-08       Impact factor: 2.924

4.  High resolution 3D visualization of the spinal cord in a post-mortem murine model.

Authors:  Inna Bukreeva; Victor Asadchikov; Alexey Buzmakov; Marina Chukalina; Anastasya Ingacheva; Nikolay A Korolev; Alberto Bravin; Alberto Mittone; Gabriele E M Biella; Alejandra Sierra; Francesco Brun; Lorenzo Massimi; Michela Fratini; Alessia Cedola
Journal:  Biomed Opt Express       Date:  2020-03-27       Impact factor: 3.732

5.  Micro-CT myelography using contrast-enhanced digital subtraction: feasibility and initial results in healthy rats.

Authors:  Pablo C Zambrano-Rodríguez; Sirio Bolaños-Puchet; Horacio J Reyes-Alva; Luis E García-Orozco; Mario E Romero-Piña; Angelina Martinez-Cruz; Gabriel Guízar-Sahagún; Luis A Medina
Journal:  Neuroradiology       Date:  2019-01-28       Impact factor: 2.804

6.  Optimization of the energy for Breast monochromatic absorption X-ray Computed Tomography.

Authors:  Pasquale Delogu; Vittorio Di Trapani; Luca Brombal; Giovanni Mettivier; Angelo Taibi; Piernicola Oliva
Journal:  Sci Rep       Date:  2019-09-11       Impact factor: 4.379

7.  A Convex Reconstruction Model for X-ray Tomographic Imaging with Uncertain Flat-fields.

Authors:  Hari Om Aggrawal; Martin S Andersen; Sean Rose; Emil Y Sidky
Journal:  IEEE Trans Comput Imaging       Date:  2017-07-04

8.  The Influence of X-Ray Computed Tomography Acquisition Parameters on Image Quality and Probability of Detection of Additive Manufacturing Defects.

Authors:  Felix H Kim; Adam L Pintar; Shawn P Moylan; Edward J Garboczi
Journal:  J Manuf Sci Eng       Date:  2019-11       Impact factor: 3.033

9.  Three-dimensional regions-of-interest-based intra-operative four-dimensional soft tissue perfusion imaging using a standard x-ray system with no gantry rotation: A simulation study for a proof of concept.

Authors:  Katsuyuki Taguchi; Thomas J Sauer; W Paul Segars; Eric C Frey; Jingyan Xu; Eleni Liapi; J Webster Stayman; Kelvin Hong; Ferdinand K Hui; Mathias Unberath; Yong Du
Journal:  Med Phys       Date:  2020-10-22       Impact factor: 4.071

10.  Characterization of arterial plaque composition with dual energy computed tomography: a simulation study.

Authors:  Huanjun Ding; Chenggong Wang; Shant Malkasian; Travis Johnson; Sabee Molloi
Journal:  Int J Cardiovasc Imaging       Date:  2020-09-02       Impact factor: 2.357

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