Literature DB >> 26044858

Data integration: Combined imaging and electrophysiology data in the cloud.

Lohith G Kini1, Kathryn A Davis2, Joost B Wagenaar3.   

Abstract

There has been an increasing effort to correlate electrophysiology data with imaging in patients with refractory epilepsy over recent years. IEEG.org provides a free-access, rapidly growing archive of imaging data combined with electrophysiology data and patient metadata. It currently contains over 1200 human and animal datasets, with multiple data modalities associated with each dataset (neuroimaging, EEG, EKG, de-identified clinical and experimental data, etc.). The platform is developed around the concept that scientific data sharing requires a flexible platform that allows sharing of data from multiple file formats. IEEG.org provides high- and low-level access to the data in addition to providing an environment in which domain experts can find, visualize, and analyze data in an intuitive manner. Here, we present a summary of the current infrastructure of the platform, available datasets and goals for the near future.
Copyright © 2015 Elsevier Inc. All rights reserved.

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Year:  2015        PMID: 26044858      PMCID: PMC4651831          DOI: 10.1016/j.neuroimage.2015.05.075

Source DB:  PubMed          Journal:  Neuroimage        ISSN: 1053-8119            Impact factor:   6.556


  19 in total

Review 1.  Spatiotemporal mapping of brain activity by integration of multiple imaging modalities.

Authors:  A M Dale; E Halgren
Journal:  Curr Opin Neurobiol       Date:  2001-04       Impact factor: 6.627

2.  Dynamic statistical parametric mapping: combining fMRI and MEG for high-resolution imaging of cortical activity.

Authors:  A M Dale; A K Liu; B R Fischl; R L Buckner; J W Belliveau; J D Lewine; E Halgren
Journal:  Neuron       Date:  2000-04       Impact factor: 17.173

3.  The EPILEPSIAE database: an extensive electroencephalography database of epilepsy patients.

Authors:  Juliane Klatt; Hinnerk Feldwisch-Drentrup; Matthias Ihle; Vincent Navarro; Markus Neufang; Cesar Teixeira; Claude Adam; Mario Valderrama; Catalina Alvarado-Rojas; Adrien Witon; Michel Le Van Quyen; Francisco Sales; Antonio Dourado; Jens Timmer; Andreas Schulze-Bonhage; Bjoern Schelter
Journal:  Epilepsia       Date:  2012-06-27       Impact factor: 5.864

Review 4.  Integration of EEG/MEG with MRI and fMRI.

Authors:  Zhongming Liu; Lei Ding; Bin He
Journal:  IEEE Eng Med Biol Mag       Date:  2006 Jul-Aug

5.  Simultaneous subdural and scalp EEG correlates of frontal lobe epileptic sources.

Authors:  Georgia Ramantani; Matthias Dümpelmann; Laurent Koessler; Armin Brandt; Delphine Cosandier-Rimélé; Josef Zentner; Andreas Schulze-Bonhage; Louis Georges Maillard
Journal:  Epilepsia       Date:  2014-01-13       Impact factor: 5.864

6.  Evaluating dipolar source localization feasibility from intracerebral SEEG recordings.

Authors:  V Caune; R Ranta; S Le Cam; J Hofmanis; L Maillard; L Koessler; V Louis-Dorr
Journal:  Neuroimage       Date:  2014-05-02       Impact factor: 6.556

7.  An open-source automated platform for three-dimensional visualization of subdural electrodes using CT-MRI coregistration.

Authors:  Allan A Azarion; Jue Wu; Allison Pearce; Veena T Krish; Joost Wagenaar; Weixuan Chen; Yuanjie Zheng; Hongzhi Wang; Timothy H Lucas; Brian Litt; James C Gee; Kathryn A Davis
Journal:  Epilepsia       Date:  2014-11-06       Impact factor: 5.864

Review 8.  Integration of EEG, MRI, and SPECT in localizing the seizure focus for epilepsy surgery.

Authors:  E L So
Journal:  Epilepsia       Date:  2000       Impact factor: 5.864

9.  Neuroimaging study designs, computational analyses and data provenance using the LONI pipeline.

Authors:  Ivo Dinov; Kamen Lozev; Petros Petrosyan; Zhizhong Liu; Paul Eggert; Jonathan Pierce; Alen Zamanyan; Shruthi Chakrapani; John Van Horn; D Stott Parker; Rico Magsipoc; Kelvin Leung; Boris Gutman; Roger Woods; Arthur Toga
Journal:  PLoS One       Date:  2010-09-28       Impact factor: 3.240

Review 10.  The Human Connectome Project: a data acquisition perspective.

Authors:  D C Van Essen; K Ugurbil; E Auerbach; D Barch; T E J Behrens; R Bucholz; A Chang; L Chen; M Corbetta; S W Curtiss; S Della Penna; D Feinberg; M F Glasser; N Harel; A C Heath; L Larson-Prior; D Marcus; G Michalareas; S Moeller; R Oostenveld; S E Petersen; F Prior; B L Schlaggar; S M Smith; A Z Snyder; J Xu; E Yacoub
Journal:  Neuroimage       Date:  2012-02-17       Impact factor: 6.556

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  18 in total

1.  Push and Pull: Borrowing Concepts From Control Theory for Seizure Spread.

Authors:  Barbara C Jobst
Journal:  Epilepsy Curr       Date:  2017 Mar-Apr       Impact factor: 7.500

2.  Science in the cloud (SIC): A use case in MRI connectomics.

Authors:  Gregory Kiar; Krzysztof J Gorgolewski; Dean Kleissas; William Gray Roncal; Brian Litt; Brian Wandell; Russel A Poldrack; Martin Wiener; R Jacob Vogelstein; Randal Burns; Joshua T Vogelstein
Journal:  Gigascience       Date:  2017-05-01       Impact factor: 6.524

3.  Virtual resection predicts surgical outcome for drug-resistant epilepsy.

Authors:  Lohith G Kini; John M Bernabei; Fadi Mikhail; Peter Hadar; Preya Shah; Ankit N Khambhati; Kelly Oechsel; Ryan Archer; Jacqueline Boccanfuso; Erin Conrad; Russell T Shinohara; Joel M Stein; Sandhitsu Das; Ammar Kheder; Timothy H Lucas; Kathryn A Davis; Danielle S Bassett; Brian Litt
Journal:  Brain       Date:  2019-12-01       Impact factor: 13.501

4.  Multiple mechanisms shape the relationship between pathway and duration of focal seizures.

Authors:  Gabrielle M Schroeder; Fahmida A Chowdhury; Mark J Cook; Beate Diehl; John S Duncan; Philippa J Karoly; Peter N Taylor; Yujiang Wang
Journal:  Brain Commun       Date:  2022-07-06

Review 5.  Automated Identification of Surgical Candidates and Estimation of Postoperative Seizure Freedom in Children - A Focused Review.

Authors:  Debopam Samanta; Jules C Beal; Zachary M Grinspan
Journal:  Semin Pediatr Neurol       Date:  2021-08-19       Impact factor: 3.042

Review 6.  Big data sharing and analysis to advance research in post-traumatic epilepsy.

Authors:  Dominique Duncan; Paul Vespa; Asla Pitkänen; Adebayo Braimah; Niina Lapinlampi; Arthur W Toga
Journal:  Neurobiol Dis       Date:  2018-06-01       Impact factor: 5.996

7.  Spatial distribution of interictal spikes fluctuates over time and localizes seizure onset.

Authors:  Erin C Conrad; Samuel B Tomlinson; Jeremy N Wong; Kelly F Oechsel; Russell T Shinohara; Brian Litt; Kathryn A Davis; Eric D Marsh
Journal:  Brain       Date:  2020-02-01       Impact factor: 13.501

8.  Characterizing the role of the structural connectome in seizure dynamics.

Authors:  Preya Shah; Arian Ashourvan; Fadi Mikhail; Adam Pines; Lohith Kini; Kelly Oechsel; Sandhitsu R Das; Joel M Stein; Russell T Shinohara; Danielle S Bassett; Brian Litt; Kathryn A Davis
Journal:  Brain       Date:  2019-07-01       Impact factor: 13.501

9.  NeuroPigPen: A Scalable Toolkit for Processing Electrophysiological Signal Data in Neuroscience Applications Using Apache Pig.

Authors:  Satya S Sahoo; Annan Wei; Joshua Valdez; Li Wang; Bilal Zonjy; Curtis Tatsuoka; Kenneth A Loparo; Samden D Lhatoo
Journal:  Front Neuroinform       Date:  2016-06-06       Impact factor: 4.081

10.  A Full-Stack Application for Detecting Seizures and Reducing Data During Continuous Electroencephalogram Monitoring.

Authors:  John M Bernabei; Olaoluwa Owoputi; Shyon D Small; Nathaniel T Nyema; Elom Dumenyo; Joongwon Kim; Steven N Baldassano; Christopher Painter; Erin C Conrad; Taneeta M Ganguly; Ramani Balu; Kathryn A Davis; Joshua M Levine; Jay Pathmanathan; Brian Litt
Journal:  Crit Care Explor       Date:  2021-07-13
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