Literature DB >> 29864492

Big data sharing and analysis to advance research in post-traumatic epilepsy.

Dominique Duncan1, Paul Vespa2, Asla Pitkänen3, Adebayo Braimah4, Niina Lapinlampi3, Arthur W Toga4.   

Abstract

We describe the infrastructure and functionality for a centralized preclinical and clinical data repository and analytic platform to support importing heterogeneous multi-modal data, automatically and manually linking data across modalities and sites, and searching content. We have developed and applied innovative image and electrophysiology processing methods to identify candidate biomarkers from MRI, EEG, and multi-modal data. Based on heterogeneous biomarkers, we present novel analytic tools designed to study epileptogenesis in animal model and human with the goal of tracking the probability of developing epilepsy over time.
Copyright © 2018 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Biomarkers; EEG; Epilepsy; Epileptogenesis; Informatics; MRI; Neuroimaging; TBI

Mesh:

Substances:

Year:  2018        PMID: 29864492      PMCID: PMC6274619          DOI: 10.1016/j.nbd.2018.05.026

Source DB:  PubMed          Journal:  Neurobiol Dis        ISSN: 0969-9961            Impact factor:   5.996


  46 in total

1.  The Global Alzheimer's Association Interactive Network.

Authors:  Arthur W Toga; Scott C Neu; Priya Bhatt; Karen L Crawford; Naveen Ashish
Journal:  Alzheimers Dement       Date:  2015-08-28       Impact factor: 21.566

Review 2.  How clinical development can, and should, inform translational science.

Authors:  Melissa Barker-Haliski; Daniel Friedman; H Steve White; Jacqueline A French
Journal:  Neuron       Date:  2014-11-05       Impact factor: 17.173

3.  EPILEPSIAE - a European epilepsy database.

Authors:  Matthias Ihle; Hinnerk Feldwisch-Drentrup; César A Teixeira; Adrien Witon; Björn Schelter; Jens Timmer; Andreas Schulze-Bonhage
Journal:  Comput Methods Programs Biomed       Date:  2010-09-21       Impact factor: 5.428

4.  Using global unique identifiers to link autism collections.

Authors:  Stephen B Johnson; Glen Whitney; Matthew McAuliffe; Hailong Wang; Evan McCreedy; Leon Rozenblit; Clark C Evans
Journal:  J Am Med Inform Assoc       Date:  2010 Nov-Dec       Impact factor: 4.497

5.  Multiscale electrophysiology format: an open-source electrophysiology format using data compression, encryption, and cyclic redundancy check.

Authors:  Benjamin H Brinkmann; Mark R Bower; Keith A Stengel; Gregory A Worrell; Matt Stead
Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2009

6.  DTI tractography and white matter fiber tract characteristics in euthymic bipolar I patients and healthy control subjects.

Authors:  Carinna M Torgerson; Andrei Irimia; Alex D Leow; George Bartzokis; Teena D Moody; Robin G Jennings; Jeffry R Alger; John Darrell Van Horn; Lori L Altshuler
Journal:  Brain Imaging Behav       Date:  2013-06       Impact factor: 3.978

Review 7.  The WU-Minn Human Connectome Project: an overview.

Authors:  David C Van Essen; Stephen M Smith; Deanna M Barch; Timothy E J Behrens; Essa Yacoub; Kamil Ugurbil
Journal:  Neuroimage       Date:  2013-05-16       Impact factor: 6.556

8.  A systems level, functional genomics analysis of chronic epilepsy.

Authors:  Kellen D Winden; Stanislav L Karsten; Anatol Bragin; Lili C Kudo; Lauren Gehman; Josephine Ruidera; Daniel H Geschwind; Jerome Engel
Journal:  PLoS One       Date:  2011-06-14       Impact factor: 3.240

9.  The National Institutes of Health's Big Data to Knowledge (BD2K) initiative: capitalizing on biomedical big data.

Authors:  Ronald Margolis; Leslie Derr; Michelle Dunn; Michael Huerta; Jennie Larkin; Jerry Sheehan; Mark Guyer; Eric D Green
Journal:  J Am Med Inform Assoc       Date:  2014-07-09       Impact factor: 4.497

10.  The FAIR Guiding Principles for scientific data management and stewardship.

Authors:  Mark D Wilkinson; Michel Dumontier; I Jsbrand Jan Aalbersberg; Gabrielle Appleton; Myles Axton; Arie Baak; Niklas Blomberg; Jan-Willem Boiten; Luiz Bonino da Silva Santos; Philip E Bourne; Jildau Bouwman; Anthony J Brookes; Tim Clark; Mercè Crosas; Ingrid Dillo; Olivier Dumon; Scott Edmunds; Chris T Evelo; Richard Finkers; Alejandra Gonzalez-Beltran; Alasdair J G Gray; Paul Groth; Carole Goble; Jeffrey S Grethe; Jaap Heringa; Peter A C 't Hoen; Rob Hooft; Tobias Kuhn; Ruben Kok; Joost Kok; Scott J Lusher; Maryann E Martone; Albert Mons; Abel L Packer; Bengt Persson; Philippe Rocca-Serra; Marco Roos; Rene van Schaik; Susanna-Assunta Sansone; Erik Schultes; Thierry Sengstag; Ted Slater; George Strawn; Morris A Swertz; Mark Thompson; Johan van der Lei; Erik van Mulligen; Jan Velterop; Andra Waagmeester; Peter Wittenburg; Katherine Wolstencroft; Jun Zhao; Barend Mons
Journal:  Sci Data       Date:  2016-03-15       Impact factor: 6.444

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  6 in total

1.  PREFACE: Antiepileptogenesis following traumatic brain injury.

Authors:  Aristea S Galanopoulou; Jerome Engel; Solomon L Moshé
Journal:  Neurobiol Dis       Date:  2018-10-09       Impact factor: 5.996

Review 2.  Imaging biomarkers of posttraumatic epileptogenesis.

Authors:  Rachael Garner; Marianna La Rocca; Paul Vespa; Nigel Jones; Martin M Monti; Arthur W Toga; Dominique Duncan
Journal:  Epilepsia       Date:  2019-10-08       Impact factor: 5.864

Review 3.  Bridging gaps between images and data: a systematic update on imaging biobanks.

Authors:  Michela Gabelloni; Lorenzo Faggioni; Rita Borgheresi; Giuliana Restante; Jorge Shortrede; Lorenzo Tumminello; Camilla Scapicchio; Francesca Coppola; Dania Cioni; Ignacio Gómez-Rico; Luis Martí-Bonmatí; Emanuele Neri
Journal:  Eur Radiol       Date:  2022-01-10       Impact factor: 5.315

Review 4.  Preface - Practical and theoretical considerations for performing a multi-center preclinical biomarker discovery study of post-traumatic epileptogenesis: lessons learned from the EpiBioS4Rx consortium.

Authors:  Asla Pitkänen; Terence J O'Brien; Richard Staba
Journal:  Epilepsy Res       Date:  2019-01-18       Impact factor: 3.045

5.  Antiepileptogenesis and disease modification: Progress, challenges, and the path forward-Report of the Preclinical Working Group of the 2018 NINDS-sponsored antiepileptogenesis and disease modification workshop.

Authors:  Aristea S Galanopoulou; Wolfgang Löscher; Laura Lubbers; Terence J O'Brien; Kevin Staley; Annamaria Vezzani; Raimondo D'Ambrosio; H Steve White; Harald Sontheimer; John A Wolf; Roy Twyman; Vicky Whittemore; Karen S Wilcox; Brian Klein
Journal:  Epilepsia Open       Date:  2021-05-06

6.  Bridging the Brain and Data Sciences.

Authors:  John Darrell Van Horn
Journal:  Big Data       Date:  2020-11-18       Impact factor: 4.426

  6 in total

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