Literature DB >> 26038227

Recent advances in engineering microbial rhodopsins for optogenetics.

R Scott McIsaac1,2, Claire N Bedbrook3, Frances H Arnold1,3.   

Abstract

Protein engineering of microbial rhodopsins has been successful in generating variants with improved properties for applications in optogenetics. Members of this membrane protein family can act as both actuators and sensors of neuronal activity. Chimeragenesis, structure-guided mutagenesis, and directed evolution have proven effective strategies for tuning absorption wavelength, altering ion specificity and increasing fluorescence. These approaches facilitate the development of useful optogenetic tools and, in some cases, have yielded insights into rhodopsin structure-function relationships.
Copyright © 2015 Elsevier Ltd. All rights reserved.

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Year:  2015        PMID: 26038227      PMCID: PMC4641784          DOI: 10.1016/j.sbi.2015.05.001

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  53 in total

1.  Running in reverse: rhodopsins sense voltage.

Authors:  Loren L Looger
Journal:  Nat Methods       Date:  2011-12-28       Impact factor: 28.547

2.  Light activation of channelrhodopsin-2 in excitable cells of Caenorhabditis elegans triggers rapid behavioral responses.

Authors:  Georg Nagel; Martin Brauner; Jana F Liewald; Nona Adeishvili; Ernst Bamberg; Alexander Gottschalk
Journal:  Curr Biol       Date:  2005-12-20       Impact factor: 10.834

3.  Multimodal fast optical interrogation of neural circuitry.

Authors:  Feng Zhang; Li-Ping Wang; Martin Brauner; Jana F Liewald; Kenneth Kay; Natalie Watzke; Phillip G Wood; Ernst Bamberg; Georg Nagel; Alexander Gottschalk; Karl Deisseroth
Journal:  Nature       Date:  2007-04-05       Impact factor: 49.962

Review 4.  Genetically engineered fluorescent voltage reporters.

Authors:  Hiroki Mutoh; Walther Akemann; Thomas Knöpfel
Journal:  ACS Chem Neurosci       Date:  2012-06-06       Impact factor: 4.418

5.  Protein interactions central to stabilizing the K+ channel selectivity filter in a four-sited configuration for selective K+ permeation.

Authors:  David B Sauer; Weizhong Zeng; Srinivasan Raghunathan; Youxing Jiang
Journal:  Proc Natl Acad Sci U S A       Date:  2011-09-20       Impact factor: 11.205

6.  Diversity of Chlamydomonas channelrhodopsins.

Authors:  Sing-Yi Hou; Elena G Govorunova; Maria Ntefidou; C Elizabeth Lane; Elena N Spudich; Oleg A Sineshchekov; John L Spudich
Journal:  Photochem Photobiol       Date:  2011-11-29       Impact factor: 3.421

7.  Channelrhodopsin-2, a directly light-gated cation-selective membrane channel.

Authors:  Georg Nagel; Tanjef Szellas; Wolfram Huhn; Suneel Kateriya; Nona Adeishvili; Peter Berthold; Doris Ollig; Peter Hegemann; Ernst Bamberg
Journal:  Proc Natl Acad Sci U S A       Date:  2003-11-13       Impact factor: 11.205

8.  Crystal structure of the channelrhodopsin light-gated cation channel.

Authors:  Hideaki E Kato; Feng Zhang; Ofer Yizhar; Charu Ramakrishnan; Tomohiro Nishizawa; Kunio Hirata; Jumpei Ito; Yusuke Aita; Tomoya Tsukazaki; Shigehiko Hayashi; Peter Hegemann; Andrés D Maturana; Ryuichiro Ishitani; Karl Deisseroth; Osamu Nureki
Journal:  Nature       Date:  2012-01-22       Impact factor: 49.962

9.  High-fidelity optical reporting of neuronal electrical activity with an ultrafast fluorescent voltage sensor.

Authors:  François St-Pierre; Jesse D Marshall; Ying Yang; Yiyang Gong; Mark J Schnitzer; Michael Z Lin
Journal:  Nat Neurosci       Date:  2014-04-22       Impact factor: 24.884

10.  ReaChR: a red-shifted variant of channelrhodopsin enables deep transcranial optogenetic excitation.

Authors:  John Y Lin; Per Magne Knutsen; Arnaud Muller; David Kleinfeld; Roger Y Tsien
Journal:  Nat Neurosci       Date:  2013-09-01       Impact factor: 24.884

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  16 in total

Review 1.  Probes for monitoring regulated exocytosis.

Authors:  Wen-Hong Li
Journal:  Cell Calcium       Date:  2017-01-09       Impact factor: 6.817

2.  Fluorescence Enhancement of a Microbial Rhodopsin via Electronic Reprogramming.

Authors:  María Del Carmen Marín; Damianos Agathangelou; Yoelvis Orozco-Gonzalez; Alessio Valentini; Yoshitaka Kato; Rei Abe-Yoshizumi; Hideki Kandori; Ahreum Choi; Kwang-Hwan Jung; Stefan Haacke; Massimo Olivucci
Journal:  J Am Chem Soc       Date:  2018-12-28       Impact factor: 15.419

3.  Theoretical optimization of high-frequency optogenetic spiking of red-shifted very fast-Chrimson-expressing neurons.

Authors:  Neha Gupta; Himanshu Bansal; Sukhdev Roy
Journal:  Neurophotonics       Date:  2019-04-11       Impact factor: 3.593

4.  Action potential block in neurons by infrared light.

Authors:  Alex J Walsh; Gleb P Tolstykh; Stacey Martens; Bennett L Ibey; Hope T Beier
Journal:  Neurophotonics       Date:  2016-12-01       Impact factor: 3.593

5.  Theoretical analysis of low-power fast optogenetic control of firing of Chronos-expressing neurons.

Authors:  Sant Saran; Neha Gupta; Sukhdev Roy
Journal:  Neurophotonics       Date:  2018-05-24       Impact factor: 3.593

Review 6.  A bright future? Optogenetics in the periphery for pain research and therapy.

Authors:  Aaron D Mickle; Robert W Gereau
Journal:  Pain       Date:  2018-09       Impact factor: 6.961

7.  a-ARM: Automatic Rhodopsin Modeling with Chromophore Cavity Generation, Ionization State Selection, and External Counterion Placement.

Authors:  Laura Pedraza-González; Luca De Vico; Marı A Del Carmen Marı N; Francesca Fanelli; Massimo Olivucci
Journal:  J Chem Theory Comput       Date:  2019-04-12       Impact factor: 6.006

Review 8.  Optogenetic Approaches to Target Specific Neural Circuits in Post-stroke Recovery.

Authors:  Michelle Y Cheng; Markus Aswendt; Gary K Steinberg
Journal:  Neurotherapeutics       Date:  2016-04       Impact factor: 7.620

9.  Discovery of a microbial rhodopsin that is the most stable in extreme environments.

Authors:  Jin-Gon Shim; Veasna Soum; Kun-Wook Kang; Kimleng Chuon; Shin-Gyu Cho; Ji-Hyun Kim; Seanghun Meas; Alina Pushkarev; Kwanwoo Shin; Kwang-Hwan Jung
Journal:  iScience       Date:  2021-05-24

Review 10.  Spotlight on pain: optogenetic approaches for interrogating somatosensory circuits.

Authors:  Bryan A Copits; Melanie Y Pullen; Robert W Gereau
Journal:  Pain       Date:  2016-11       Impact factor: 7.926

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