Literature DB >> 22266941

Crystal structure of the channelrhodopsin light-gated cation channel.

Hideaki E Kato1, Feng Zhang, Ofer Yizhar, Charu Ramakrishnan, Tomohiro Nishizawa, Kunio Hirata, Jumpei Ito, Yusuke Aita, Tomoya Tsukazaki, Shigehiko Hayashi, Peter Hegemann, Andrés D Maturana, Ryuichiro Ishitani, Karl Deisseroth, Osamu Nureki.   

Abstract

Channelrhodopsins (ChRs) are light-gated cation channels derived from algae that have shown experimental utility in optogenetics; for example, neurons expressing ChRs can be optically controlled with high temporal precision within systems as complex as freely moving mammals. Although ChRs have been broadly applied to neuroscience research, little is known about the molecular mechanisms by which these unusual and powerful proteins operate. Here we present the crystal structure of a ChR (a C1C2 chimaera between ChR1 and ChR2 from Chlamydomonas reinhardtii) at 2.3 Å resolution. The structure reveals the essential molecular architecture of ChRs, including the retinal-binding pocket and cation conduction pathway. This integration of structural and electrophysiological analyses provides insight into the molecular basis for the remarkable function of ChRs, and paves the way for the precise and principled design of ChR variants with novel properties.

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Year:  2012        PMID: 22266941      PMCID: PMC4160518          DOI: 10.1038/nature10870

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  44 in total

1.  Substructure solution with SHELXD.

Authors:  Thomas R Schneider; George M Sheldrick
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-09-28

2.  Conformational changes of channelrhodopsin-2.

Authors:  Ionela Radu; Christian Bamann; Melanie Nack; Georg Nagel; Ernst Bamberg; Joachim Heberle
Journal:  J Am Chem Soc       Date:  2009-06-03       Impact factor: 15.419

3.  Molecular determinants differentiating photocurrent properties of two channelrhodopsins from chlamydomonas.

Authors:  Hongxia Wang; Yuka Sugiyama; Takuya Hikima; Eriko Sugano; Hiroshi Tomita; Tetsuo Takahashi; Toru Ishizuka; Hiromu Yawo
Journal:  J Biol Chem       Date:  2008-12-22       Impact factor: 5.157

4.  Bi-stable neural state switches.

Authors:  André Berndt; Ofer Yizhar; Lisa A Gunaydin; Peter Hegemann; Karl Deisseroth
Journal:  Nat Neurosci       Date:  2008-12-08       Impact factor: 24.884

5.  Protein structure prediction on the Web: a case study using the Phyre server.

Authors:  Lawrence A Kelley; Michael J E Sternberg
Journal:  Nat Protoc       Date:  2009       Impact factor: 13.491

6.  Very fast prediction and rationalization of pKa values for protein-ligand complexes.

Authors:  Delphine C Bas; David M Rogers; Jan H Jensen
Journal:  Proteins       Date:  2008-11-15

7.  High-efficiency channelrhodopsins for fast neuronal stimulation at low light levels.

Authors:  André Berndt; Philipp Schoenenberger; Joanna Mattis; Kay M Tye; Karl Deisseroth; Peter Hegemann; Thomas G Oertner
Journal:  Proc Natl Acad Sci U S A       Date:  2011-04-19       Impact factor: 11.205

8.  Optogenetics in neural systems.

Authors:  Ofer Yizhar; Lief E Fenno; Thomas J Davidson; Murtaza Mogri; Karl Deisseroth
Journal:  Neuron       Date:  2011-07-14       Impact factor: 17.173

9.  Ultra light-sensitive and fast neuronal activation with the Ca²+-permeable channelrhodopsin CatCh.

Authors:  Sonja Kleinlogel; Katrin Feldbauer; Robert E Dempski; Heike Fotis; Phillip G Wood; Christian Bamann; Ernst Bamberg
Journal:  Nat Neurosci       Date:  2011-03-13       Impact factor: 24.884

10.  Opto-current-clamp actuation of cortical neurons using a strategically designed channelrhodopsin.

Authors:  Lei Wen; Hongxia Wang; Saki Tanimoto; Ryo Egawa; Yoshiya Matsuzaka; Hajime Mushiake; Toru Ishizuka; Hiromu Yawo
Journal:  PLoS One       Date:  2010-09-23       Impact factor: 3.240

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  193 in total

1.  Structural biology: Ion channel in the spotlight.

Authors:  Oliver P Ernst; Thomas P Sakmar
Journal:  Nature       Date:  2012-02-15       Impact factor: 49.962

2.  Tuning the primary reaction of channelrhodopsin-2 by imidazole, pH, and site-specific mutations.

Authors:  Frank Scholz; Ernst Bamberg; Christian Bamann; Josef Wachtveitl
Journal:  Biophys J       Date:  2012-06-05       Impact factor: 4.033

3.  Enlightening the photoactive site of channelrhodopsin-2 by DNP-enhanced solid-state NMR spectroscopy.

Authors:  Johanna Becker-Baldus; Christian Bamann; Krishna Saxena; Henrik Gustmann; Lynda J Brown; Richard C D Brown; Christian Reiter; Ernst Bamberg; Josef Wachtveitl; Harald Schwalbe; Clemens Glaubitz
Journal:  Proc Natl Acad Sci U S A       Date:  2015-07-27       Impact factor: 11.205

4.  Structural foundations of optogenetics: Determinants of channelrhodopsin ion selectivity.

Authors:  Andre Berndt; Soo Yeun Lee; Jonas Wietek; Charu Ramakrishnan; Elizabeth E Steinberg; Asim J Rashid; Hoseok Kim; Sungmo Park; Adam Santoro; Paul W Frankland; Shrivats M Iyer; Sally Pak; Sofie Ährlund-Richter; Scott L Delp; Robert C Malenka; Sheena A Josselyn; Marie Carlén; Peter Hegemann; Karl Deisseroth
Journal:  Proc Natl Acad Sci U S A       Date:  2015-12-22       Impact factor: 11.205

5.  Neuroscience. Algae are the best engineers of optogenetic inhibitors.

Authors:  Nina Vogt
Journal:  Nat Methods       Date:  2015-09       Impact factor: 28.547

6.  Characterization of a highly efficient blue-shifted channelrhodopsin from the marine alga Platymonas subcordiformis.

Authors:  Elena G Govorunova; Oleg A Sineshchekov; Hai Li; Roger Janz; John L Spudich
Journal:  J Biol Chem       Date:  2013-08-30       Impact factor: 5.157

Review 7.  Microbial and animal rhodopsins: structures, functions, and molecular mechanisms.

Authors:  Oliver P Ernst; David T Lodowski; Marcus Elstner; Peter Hegemann; Leonid S Brown; Hideki Kandori
Journal:  Chem Rev       Date:  2013-12-23       Impact factor: 60.622

Review 8.  The photochemical determinants of color vision: revealing how opsins tune their chromophore's absorption wavelength.

Authors:  Wenjing Wang; James H Geiger; Babak Borhan
Journal:  Bioessays       Date:  2013-10-24       Impact factor: 4.345

Review 9.  Cardiac optogenetics.

Authors:  Emilia Entcheva
Journal:  Am J Physiol Heart Circ Physiol       Date:  2013-03-01       Impact factor: 4.733

10.  The BioLuminescent-OptoGenetic in vivo response to coelenterazine is proportional, sensitive, and specific in neocortex.

Authors:  Manuel Gomez-Ramirez; Alexander I More; Nina G Friedman; Ute Hochgeschwender; Christopher I Moore
Journal:  J Neurosci Res       Date:  2019-09-23       Impact factor: 4.164

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