Literature DB >> 15793574

Infrared spectroscopic imaging for histopathologic recognition.

Daniel C Fernandez1, Rohit Bhargava, Stephen M Hewitt, Ira W Levin.   

Abstract

The process of histopathology, comprising tissue staining and morphological pattern recognition, has remained largely unchanged for over 140 years. Although it is integral to clinical and research activities, histopathologic recognition remains a time-consuming, subjective process to which only limited statistical confidence can be assigned because of inherent operator variability. Although immunohistochemical approaches allow limited molecular detection, significant challenges remain in using them for quantitative, automated pathology. Vibrational spectroscopic approaches, by contrast, directly provide nonperturbing molecular descriptors, but a practical spectroscopic protocol for histopathology is lacking. Here we couple high-throughput Fourier transform infrared (FTIR) spectroscopic imaging of tissue microarrays with statistical pattern recognition of spectra indicative of endogenous molecular composition and demonstrate histopathologic characterization of prostatic tissue. This automated histologic segmentation is applied to routine archival tissue samples, incorporates well-defined tests of statistical significance and eliminates any requirement for dyes or molecular probes. Finally, we differentiate benign from malignant prostatic epithelium by spectroscopic analyses.

Mesh:

Year:  2005        PMID: 15793574     DOI: 10.1038/nbt1080

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN: 1087-0156            Impact factor:   54.908


  109 in total

1.  Analysis of variance in spectroscopic imaging data from human tissues.

Authors:  Jin Tae Kwak; Rohith Reddy; Saurabh Sinha; Rohit Bhargava
Journal:  Anal Chem       Date:  2011-12-28       Impact factor: 6.986

2.  Optimally designed nanolayered metal-dielectric particles as probes for massively multiplexed and ultrasensitive molecular assays.

Authors:  Anil K Kodali; Xavier Llora; Rohit Bhargava
Journal:  Proc Natl Acad Sci U S A       Date:  2010-07-15       Impact factor: 11.205

3.  Attenuated total reflectance Fourier-transform infrared spectroscopic imaging for breast histopathology.

Authors:  Michael J Walsh; Andre Kajdacsy-Balla; Sarah E Holton; Rohit Bhargava
Journal:  Vib Spectrosc       Date:  2012-05-01       Impact factor: 2.507

4.  Classification of malignant and benign tumors of the lung by infrared spectral histopathology (SHP).

Authors:  Ali Akalin; Xinying Mu; Mark A Kon; Ayşegül Ergin; Stan H Remiszewski; Clay M Thompson; Dan J Raz; Max Diem; Benjamin Bird; Miloš Miljković
Journal:  Lab Invest       Date:  2015-02-09       Impact factor: 5.662

5.  Detection of endogenous biomolecules in Barrett's esophagus by Fourier transform infrared spectroscopy.

Authors:  Thomas D Wang; George Triadafilopoulos; James M Crawford; Lisa R Dixon; Tarun Bhandari; Peyman Sahbaie; Shai Friedland; Roy Soetikno; Christopher H Contag
Journal:  Proc Natl Acad Sci U S A       Date:  2007-09-27       Impact factor: 11.205

Review 6.  Infrared spectroscopic imaging: the next generation.

Authors:  Rohit Bhargava
Journal:  Appl Spectrosc       Date:  2012-10       Impact factor: 2.388

7.  Hyperspectral Tissue Image Segmentation Using Semi-Supervised NMF and Hierarchical Clustering.

Authors:  Neeraj Kumar; Phanikrishna Uppala; Karthik Duddu; Hari Sreedhar; Vishal Varma; Grace Guzman; Michael Walsh; Amit Sethi
Journal:  IEEE Trans Med Imaging       Date:  2018-11-26       Impact factor: 10.048

8.  Altered cytoplasmic-to-nuclear ratio of survivin is a prognostic indicator in breast cancer.

Authors:  Donal J Brennan; Elton Rexhepaj; Sallyann L O'Brien; Elaine McSherry; Darran P O'Connor; Ailís Fagan; Aedín C Culhane; Desmond G Higgins; Karin Jirstrom; Robert C Millikan; Goran Landberg; Michael J Duffy; Stephen M Hewitt; William M Gallagher
Journal:  Clin Cancer Res       Date:  2008-05-01       Impact factor: 12.531

9.  Dynamic full-field infrared imaging with multiple synchrotron beams.

Authors:  Eli Stavitski; Randy J Smith; Megan W Bourassa; Alvin S Acerbo; G L Carr; Lisa M Miller
Journal:  Anal Chem       Date:  2013-03-21       Impact factor: 6.986

Review 10.  Biomolecular imaging with coherent nonlinear vibrational microscopy.

Authors:  Chao-Yu Chung; Eric O Potma
Journal:  Annu Rev Phys Chem       Date:  2012-12-05       Impact factor: 12.703

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.