Literature DB >> 26029446

Crystal structure of 8-hy-droxy-quinolin-ium 2-carboxy-6-nitro-benzoate mono-hydrate.

M Divya Bharathi1, G Ahila1, J Mohana1, G Chakkaravarthi2, G Anbalagan1.   

Abstract

In the title hydrated salt, C9H8NO(+)·C8H4NO6 (-)·H2O, the deprotonated carboxyl-ate group is almost normal to its attached benzene ring [dihedral angle = 83.56 (8)°], whereas the protonated carboxyl-ate group is close to parallel [dihedral angle = 24.56 (9)°]. In the crystal, the components are linked by N-H⋯O and O-H⋯O hydrogen bonds, generating [001] chains. The packing is consolidated by C-H⋯O and π-π [centroid-to-centroid distances = 3.6408 (9) and 3.6507 (9) Å] inter-actions, which result in a three-dimensional network.

Entities:  

Keywords:  2-carboxy-6-nitro­benzoate; 8-hy­droxy­quinolinium; crystal structure; hydrogen bonding; π–π inter­actions

Year:  2015        PMID: 26029446      PMCID: PMC4438817          DOI: 10.1107/S205698901500571X

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For the biological activity of quinoline derivatives, see: Font et al. (1997 ▸); Sloboda et al. (1991 ▸). For similar structures, see: Castañeda et al. (2014 ▸); Kafka et al. (2012 ▸); Li & Chai (2007 ▸).

Experimental

Crystal data

C9H8NO+·C8H4n class="Chemical">NO6 −·H2O M = 374.30 Monoclinic, a = 14.4283 (5) Å b = 13.8196 (5) Å c = 8.0483 (3) Å β = 101.441 (2)° V = 1572.89 (10) Å3 Z = 4 Mo Kα radiation μ = 0.13 mm−1 T = 295 K 0.26 × 0.22 × 0.18 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▸) T min = 0.968, T max = 0.977 58922 measured reflections 7431 independent reflections 4272 reflections with I > 2σ(I) R int = 0.034

Refinement

R[F 2 > 2σ(F 2)] = 0.060 wR(F 2) = 0.176 S = 1.02 7431 reflections 260 parameters 5 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.50 e Å−3 Δρmin = −0.38 e Å−3

Data collection: APEX2 (Bruker, 2004 ▸); cell refinement: SAINT (Bruker, 2004 ▸); data reduction: SAIn class="Chemical">NT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▸); molecular graphics: PLATON (Spek, 2009 ▸); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S205698901500571X/hb7385sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S205698901500571X/hb7385Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S205698901500571X/hb7385Isup3.cml Click here for additional data file. . DOI: 10.1107/S205698901500571X/hb7385fig1.tif The mol­ecular structure of (I), with 30% probability displacement ellipsoids for non-H atoms. Click here for additional data file. c . DOI: 10.1107/S205698901500571X/hb7385fig2.tif The packing of (I), viewed down c axis. Hydrogen bonds are shown as dashed lines. H atoms not involved in hydrogen bonding have been omitted. CCDC reference: 1055171 Additional supporting information: crystallographic information; 3D view; checkCIF report
C9H8NO+·C8H4NO6·H2OF(000) = 776
Mr = 374.30Dx = 1.581 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 9900 reflections
a = 14.4283 (5) Åθ = 2.8–33.4°
b = 13.8196 (5) ŵ = 0.13 mm1
c = 8.0483 (3) ÅT = 295 K
β = 101.441 (2)°Block, colourless
V = 1572.89 (10) Å30.26 × 0.22 × 0.18 mm
Z = 4
Bruker Kappa APEXII CCD diffractometer7431 independent reflections
Radiation source: fine-focus sealed tube4272 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.034
ω and φ scansθmax = 36.1°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −23→23
Tmin = 0.968, Tmax = 0.977k = −19→22
58922 measured reflectionsl = −13→12
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.060Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.176H atoms treated by a mixture of independent and constrained refinement
S = 1.02w = 1/[σ2(Fo2) + (0.0619P)2 + 0.9848P] where P = (Fo2 + 2Fc2)/3
7431 reflections(Δ/σ)max < 0.001
260 parametersΔρmax = 0.50 e Å3
5 restraintsΔρmin = −0.38 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.17265 (9)0.48978 (9)0.55989 (18)0.0237 (2)
C20.13410 (10)0.48988 (10)0.70682 (19)0.0262 (3)
C30.06506 (11)0.42272 (12)0.7270 (2)0.0331 (3)
H30.04030.42380.82520.040*
C40.03290 (11)0.35481 (12)0.6037 (2)0.0370 (4)
H4−0.01170.30910.62030.044*
C50.06716 (11)0.35508 (12)0.4557 (2)0.0339 (3)
H50.04490.31080.37020.041*
C60.13531 (10)0.42230 (10)0.43632 (19)0.0267 (3)
C70.24827 (10)0.56315 (10)0.53939 (18)0.0249 (3)
C80.16432 (11)0.56359 (11)0.84160 (19)0.0294 (3)
C90.46422 (11)0.34368 (10)0.87844 (19)0.0288 (3)
C100.53122 (13)0.40133 (12)0.8201 (2)0.0377 (4)
H100.52250.46800.81250.045*
C110.60883 (13)0.36137 (14)0.7744 (2)0.0424 (4)
H110.65210.40020.73410.051*
C120.62252 (11)0.26245 (14)0.7886 (2)0.0390 (4)
H120.67520.23460.75750.047*
C130.48139 (9)0.24333 (10)0.89029 (18)0.0247 (3)
C140.41699 (10)0.18003 (10)0.94525 (19)0.0284 (3)
C150.33963 (11)0.21885 (13)0.9934 (2)0.0364 (3)
H150.29780.17851.03460.044*
C160.32192 (13)0.31850 (15)0.9818 (2)0.0432 (4)
H160.26800.34281.01400.052*
C170.38181 (13)0.38061 (12)0.9246 (2)0.0390 (4)
H170.36850.44650.91600.047*
N10.16655 (10)0.42040 (10)0.27386 (18)0.0337 (3)
N20.56126 (9)0.20732 (9)0.84612 (17)0.0305 (3)
H20.5741 (15)0.1450 (8)0.866 (3)0.047 (6)*
O10.22455 (12)0.47889 (11)0.24810 (18)0.0545 (4)
O20.13344 (13)0.35960 (13)0.1701 (2)0.0684 (5)
O30.33312 (7)0.53639 (8)0.57868 (15)0.0318 (2)
O40.22067 (8)0.64521 (8)0.49029 (15)0.0326 (2)
O50.09894 (10)0.57856 (11)0.93152 (18)0.0465 (3)
H5A0.1152 (18)0.6216 (15)1.002 (3)0.070*
O60.23875 (9)0.60562 (10)0.86357 (17)0.0435 (3)
O70.43930 (9)0.08565 (8)0.94455 (17)0.0378 (3)
H70.3990 (13)0.0519 (15)0.981 (3)0.057*
O80.13275 (9)0.78915 (10)0.66412 (16)0.0392 (3)
H8A0.1644 (15)0.8061 (18)0.7569 (18)0.059*
H8B0.1616 (16)0.7423 (13)0.635 (3)0.059*
U11U22U33U12U13U23
C10.0214 (5)0.0215 (5)0.0289 (6)0.0023 (4)0.0070 (5)0.0021 (5)
C20.0244 (6)0.0266 (6)0.0286 (7)0.0001 (5)0.0074 (5)0.0023 (5)
C30.0308 (7)0.0365 (8)0.0344 (8)−0.0042 (6)0.0123 (6)0.0047 (6)
C40.0300 (7)0.0364 (8)0.0457 (9)−0.0096 (6)0.0101 (7)0.0028 (7)
C50.0298 (7)0.0321 (7)0.0395 (8)−0.0067 (6)0.0064 (6)−0.0041 (6)
C60.0244 (6)0.0262 (6)0.0304 (7)0.0012 (5)0.0076 (5)−0.0007 (5)
C70.0269 (6)0.0238 (6)0.0262 (6)−0.0013 (5)0.0109 (5)−0.0016 (5)
C80.0323 (7)0.0301 (7)0.0269 (7)0.0003 (5)0.0084 (5)0.0024 (5)
C90.0337 (7)0.0212 (6)0.0294 (7)0.0003 (5)0.0014 (5)0.0015 (5)
C100.0465 (9)0.0239 (7)0.0395 (8)−0.0065 (6)0.0006 (7)0.0066 (6)
C110.0365 (8)0.0441 (9)0.0449 (10)−0.0124 (7)0.0041 (7)0.0152 (8)
C120.0267 (7)0.0467 (9)0.0441 (9)−0.0008 (6)0.0088 (6)0.0120 (7)
C130.0249 (6)0.0221 (6)0.0264 (6)−0.0004 (4)0.0034 (5)0.0023 (5)
C140.0289 (7)0.0256 (6)0.0303 (7)−0.0042 (5)0.0052 (5)0.0017 (5)
C150.0316 (7)0.0420 (9)0.0371 (8)−0.0043 (6)0.0103 (6)0.0004 (7)
C160.0377 (8)0.0510 (10)0.0427 (9)0.0119 (7)0.0126 (7)−0.0041 (8)
C170.0446 (9)0.0305 (7)0.0415 (9)0.0111 (7)0.0072 (7)−0.0023 (7)
N10.0339 (7)0.0353 (7)0.0334 (7)−0.0031 (5)0.0103 (5)−0.0067 (5)
N20.0281 (6)0.0267 (6)0.0368 (7)0.0031 (4)0.0069 (5)0.0071 (5)
O10.0734 (10)0.0545 (8)0.0431 (7)−0.0271 (7)0.0301 (7)−0.0107 (6)
O20.0782 (11)0.0794 (12)0.0555 (9)−0.0402 (9)0.0328 (8)−0.0384 (8)
O30.0249 (5)0.0287 (5)0.0439 (6)0.0004 (4)0.0122 (4)−0.0032 (4)
O40.0375 (6)0.0241 (5)0.0365 (6)0.0007 (4)0.0084 (5)0.0031 (4)
O50.0434 (7)0.0575 (8)0.0442 (7)−0.0089 (6)0.0222 (6)−0.0169 (6)
O60.0428 (7)0.0496 (7)0.0410 (7)−0.0147 (6)0.0153 (5)−0.0122 (6)
O70.0393 (6)0.0232 (5)0.0537 (7)−0.0050 (4)0.0161 (5)0.0044 (5)
O80.0429 (7)0.0397 (7)0.0361 (6)0.0043 (5)0.0104 (5)0.0014 (5)
C1—C61.392 (2)C11—C121.383 (3)
C1—C21.4030 (19)C11—H110.9300
C1—C71.5222 (18)C12—N21.318 (2)
C2—C31.394 (2)C12—H120.9300
C2—C81.489 (2)C13—N21.3655 (18)
C3—C41.378 (2)C13—C141.4097 (19)
C3—H30.9300C14—O71.3437 (18)
C4—C51.377 (2)C14—C151.362 (2)
C4—H40.9300C15—C161.400 (3)
C5—C61.384 (2)C15—H150.9300
C5—H50.9300C16—C171.362 (3)
C6—N11.4654 (19)C16—H160.9300
C7—O41.2404 (17)C17—H170.9300
C7—O31.2577 (17)N1—O11.2106 (18)
C8—O61.2028 (19)N1—O21.2137 (19)
C8—O51.3142 (19)N2—H20.889 (9)
C9—C101.403 (2)O5—H5A0.823 (10)
C9—C131.4085 (19)O7—H70.841 (9)
C9—C171.410 (2)O8—H8A0.828 (10)
C10—C111.363 (3)O8—H8B0.829 (10)
C10—H100.9300
C6—C1—C2116.16 (12)C10—C11—C12119.32 (15)
C6—C1—C7123.58 (12)C10—C11—H11120.3
C2—C1—C7120.21 (12)C12—C11—H11120.3
C3—C2—C1120.61 (14)N2—C12—C11120.37 (16)
C3—C2—C8118.90 (13)N2—C12—H12119.8
C1—C2—C8120.46 (12)C11—C12—H12119.8
C4—C3—C2121.06 (14)N2—C13—C9119.16 (13)
C4—C3—H3119.5N2—C13—C14119.89 (13)
C2—C3—H3119.5C9—C13—C14120.94 (13)
C5—C4—C3119.59 (14)O7—C14—C15126.44 (14)
C5—C4—H4120.2O7—C14—C13115.32 (13)
C3—C4—H4120.2C15—C14—C13118.23 (14)
C4—C5—C6118.98 (15)C14—C15—C16121.17 (15)
C4—C5—H5120.5C14—C15—H15119.4
C6—C5—H5120.5C16—C15—H15119.4
C5—C6—C1123.52 (14)C17—C16—C15121.51 (16)
C5—C6—N1116.10 (13)C17—C16—H16119.2
C1—C6—N1120.38 (12)C15—C16—H16119.2
O4—C7—O3125.72 (13)C16—C17—C9119.08 (15)
O4—C7—C1116.86 (12)C16—C17—H17120.5
O3—C7—C1117.37 (12)C9—C17—H17120.5
O6—C8—O5124.10 (15)O1—N1—O2122.38 (15)
O6—C8—C2124.14 (14)O1—N1—C6119.10 (13)
O5—C8—C2111.75 (13)O2—N1—C6118.52 (14)
C10—C9—C13117.26 (14)C12—N2—C13122.68 (14)
C10—C9—C17123.74 (14)C12—N2—H2119.6 (14)
C13—C9—C17119.00 (14)C13—N2—H2117.5 (14)
C11—C10—C9121.17 (15)C8—O5—H5A110.8 (19)
C11—C10—H10119.4C14—O7—H7110.7 (17)
C9—C10—H10119.4H8A—O8—H8B105 (2)
C6—C1—C2—C32.4 (2)C9—C10—C11—C12−1.1 (3)
C7—C1—C2—C3−179.76 (13)C10—C11—C12—N2−0.1 (3)
C6—C1—C2—C8−175.78 (13)C10—C9—C13—N20.3 (2)
C7—C1—C2—C82.0 (2)C17—C9—C13—N2−179.84 (14)
C1—C2—C3—C40.0 (2)C10—C9—C13—C14−179.04 (14)
C8—C2—C3—C4178.20 (15)C17—C9—C13—C140.8 (2)
C2—C3—C4—C5−2.1 (3)N2—C13—C14—O7−2.0 (2)
C3—C4—C5—C61.7 (3)C9—C13—C14—O7177.38 (14)
C4—C5—C6—C10.8 (2)N2—C13—C14—C15177.96 (14)
C4—C5—C6—N1−178.24 (15)C9—C13—C14—C15−2.7 (2)
C2—C1—C6—C5−2.9 (2)O7—C14—C15—C16−177.32 (17)
C7—C1—C6—C5179.40 (14)C13—C14—C15—C162.8 (2)
C2—C1—C6—N1176.16 (13)C14—C15—C16—C17−1.0 (3)
C7—C1—C6—N1−1.6 (2)C15—C16—C17—C9−1.0 (3)
C6—C1—C7—O496.24 (16)C10—C9—C17—C16−179.12 (17)
C2—C1—C7—O4−81.38 (17)C13—C9—C17—C161.0 (2)
C6—C1—C7—O3−85.96 (18)C5—C6—N1—O1178.42 (16)
C2—C1—C7—O396.42 (16)C1—C6—N1—O1−0.7 (2)
C3—C2—C8—O6157.79 (16)C5—C6—N1—O2−2.0 (2)
C1—C2—C8—O6−24.0 (2)C1—C6—N1—O2178.93 (17)
C3—C2—C8—O5−23.5 (2)C11—C12—N2—C131.5 (3)
C1—C2—C8—O5154.77 (14)C9—C13—N2—C12−1.6 (2)
C13—C9—C10—C111.0 (2)C14—C13—N2—C12177.75 (15)
C17—C9—C10—C11−178.83 (17)
D—H···AD—HH···AD···AD—H···A
N2—H2···O3i0.89 (1)2.00 (1)2.8112 (16)151 (2)
O5—H5A···O8ii0.82 (1)1.78 (1)2.5928 (18)171 (3)
O7—H7···O3iii0.84 (1)1.82 (1)2.6482 (15)168 (2)
O8—H8B···O40.83 (1)2.07 (1)2.8683 (17)163 (2)
O8—H8A···O4ii0.83 (1)2.01 (1)2.8288 (18)170 (2)
C11—H11···O1iv0.932.423.295 (2)156
C12—H12···O6i0.932.483.343 (2)155
C16—H16···O2v0.932.523.413 (2)160
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
N2H2O3i 0.89(1)2.00(1)2.8112(16)151(2)
O5H5AO8ii 0.82(1)1.78(1)2.5928(18)171(3)
O7H7O3iii 0.84(1)1.82(1)2.6482(15)168(2)
O8H8BO40.83(1)2.07(1)2.8683(17)163(2)
O8H8AO4ii 0.83(1)2.01(1)2.8288(18)170(2)
C11H11O1iv 0.932.423.295(2)156
C12H12O6i 0.932.483.343(2)155
C16H16O2v 0.932.523.413(2)160

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Antiinflammatory and antiarthritic properties of a substituted quinoline carboxylic acid: CL 306,293.

Authors:  A E Sloboda; D Powell; J F Poletto; W C Pickett; J J Gibbons; D H Bell; A L Oronsky; S S Kerwar
Journal:  J Rheumatol       Date:  1991-06       Impact factor: 4.666

3.  Structure-activity relationships in quinoline Reissert derivatives with HIV-1 reverse transcriptase inhibitory activity.

Authors:  M Font; A Monge; I Ruiz; B Heras
Journal:  Drug Des Discov       Date:  1997-04

4.  3-Ethyl-3-hy-droxy-8-meth-oxy-quinoline-2,4(1H,3H)-dione monohydrate.

Authors:  Stanislav Kafka; Andrej Pevec; Karel Proisl; Roman Kimmel; Janez Košmrlj
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-10-24

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20

6.  Crystal structure of 8-hy-droxy-quinoline: a new monoclinic polymorph.

Authors:  Raúl Castañeda; Sofia A Antal; Sergiu Draguta; Tatiana V Timofeeva; Victor N Khrustalev
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-08-01
  6 in total

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