| Literature DB >> 23284509 |
Stanislav Kafka1, Andrej Pevec, Karel Proisl, Roman Kimmel, Janez Košmrlj.
Abstract
In the title hydrate, C(12)H(13)NO(4)·H(2)O, the piperidine ring that is fused to the benzene ring is in a sofa conformation with the chiral C atom lying 0.4084 (18) Å out of the plane of the nine fused-ring atoms. In the crystal, O-H⋯O and N-H⋯O hydrogen bonds link the organic mol-ecules and water mol-ecules into chains running along the b-axis direction. The chains are further connected into layers parallel to the bc plane by π-π inter-actions between inversion-related benzene rings [centroid-centroid distance = 3.8846 (9) Å].Entities:
Year: 2012 PMID: 23284509 PMCID: PMC3515289 DOI: 10.1107/S1600536812043280
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C12H13NO4·H2O | |
| Melting point = 371–372 K | |
| Orthorhombic, | Mo |
| Hall symbol: -P 2ac 2ab | Cell parameters from 3161 reflections |
| θ = 1.0–27.5° | |
| µ = 0.11 mm−1 | |
| Prism, yellow | |
| 0.50 × 0.25 × 0.20 mm | |
| Nonius KappaCCD area-detector diffractometer | 2779 independent reflections |
| Radiation source: fine-focus sealed tube | 1963 reflections with |
| Graphite monochromator | |
| φ scans + ω scans | θmax = 27.5°, θmin = 3.4° |
| Absorption correction: multi-scan ( | |
| 5200 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2779 reflections | (Δ/σ)max = 0.0001 |
| 175 parameters | Δρmax = 0.26 e Å−3 |
| 3 restraints | Δρmin = −0.23 e Å−3 |
| Experimental. 211 frames in 4 sets of φ scans + ω scans. Rotation/frame = 2 °. Crystal-detector distance = 31 mm. Measuring time = 20 s/°. |
| Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | 0.08014 (8) | 0.56475 (12) | 0.75104 (6) | 0.0505 (3) | |
| O2 | 0.04557 (8) | 0.18242 (13) | 0.56925 (8) | 0.0576 (4) | |
| O3 | 0.05871 (8) | 0.26982 (13) | 0.72594 (7) | 0.0527 (3) | |
| H3 | 0.0359 | 0.1965 | 0.7058 | 0.079* | |
| O4 | 0.14902 (8) | 0.81485 (13) | 0.51080 (7) | 0.0542 (3) | |
| N1 | 0.11348 (8) | 0.61105 (15) | 0.62211 (7) | 0.0395 (3) | |
| H1N | 0.1065 (10) | 0.7068 (16) | 0.6299 (11) | 0.047* | |
| C1 | 0.09586 (9) | 0.51728 (17) | 0.68405 (8) | 0.0374 (3) | |
| C2 | 0.10269 (9) | 0.34757 (17) | 0.66669 (9) | 0.0392 (4) | |
| C3 | 0.07607 (9) | 0.30617 (16) | 0.58203 (10) | 0.0408 (4) | |
| C4 | 0.09477 (9) | 0.41692 (17) | 0.51912 (9) | 0.0381 (3) | |
| C5 | 0.09051 (10) | 0.3782 (2) | 0.43780 (10) | 0.0481 (4) | |
| H5 | 0.0777 | 0.2795 | 0.4227 | 0.058* | |
| C6 | 0.10534 (11) | 0.4863 (2) | 0.38047 (10) | 0.0527 (4) | |
| H6 | 0.1023 | 0.4608 | 0.3264 | 0.063* | |
| C7 | 0.12485 (10) | 0.6336 (2) | 0.40285 (9) | 0.0492 (4) | |
| H7 | 0.1344 | 0.7062 | 0.3634 | 0.059* | |
| C8 | 0.13022 (9) | 0.67423 (18) | 0.48253 (9) | 0.0410 (4) | |
| C9 | 0.11398 (9) | 0.56549 (17) | 0.54186 (8) | 0.0358 (3) | |
| C10 | 0.19372 (10) | 0.3023 (2) | 0.67026 (10) | 0.0523 (4) | |
| H10A | 0.1986 | 0.1950 | 0.6581 | 0.063* | |
| H10B | 0.2228 | 0.3579 | 0.6291 | 0.063* | |
| C11 | 0.23315 (12) | 0.3326 (3) | 0.74990 (11) | 0.0683 (6) | |
| H11A | 0.2035 | 0.2817 | 0.7915 | 0.102* | |
| H11B | 0.2333 | 0.4399 | 0.7602 | 0.102* | |
| H11C | 0.2879 | 0.2957 | 0.7490 | 0.102* | |
| C12 | 0.16490 (14) | 0.9320 (2) | 0.45424 (12) | 0.0670 (6) | |
| H12A | 0.1179 | 0.9477 | 0.4214 | 0.101* | |
| H12B | 0.2099 | 0.9033 | 0.4210 | 0.101* | |
| H12C | 0.1777 | 1.0243 | 0.4822 | 0.101* | |
| O1W | 0.06321 (11) | 0.90745 (16) | 0.66799 (10) | 0.0752 (5) | |
| H1W | 0.0478 (14) | 0.978 (3) | 0.6301 (13) | 0.090* | |
| H2W | 0.0132 (11) | 0.900 (3) | 0.6914 (14) | 0.090* |
| O1 | 0.0709 (8) | 0.0477 (7) | 0.0329 (6) | 0.0008 (5) | 0.0073 (5) | −0.0009 (5) |
| O2 | 0.0692 (8) | 0.0379 (6) | 0.0657 (8) | −0.0052 (5) | −0.0121 (6) | −0.0034 (5) |
| O3 | 0.0674 (8) | 0.0436 (6) | 0.0472 (7) | −0.0100 (6) | 0.0055 (6) | 0.0084 (5) |
| O4 | 0.0786 (9) | 0.0454 (6) | 0.0386 (6) | −0.0116 (6) | 0.0060 (6) | 0.0066 (5) |
| N1 | 0.0543 (8) | 0.0341 (6) | 0.0301 (6) | −0.0024 (5) | 0.0009 (5) | −0.0008 (5) |
| C1 | 0.0403 (8) | 0.0402 (8) | 0.0318 (7) | 0.0000 (6) | 0.0002 (6) | 0.0013 (6) |
| C2 | 0.0440 (8) | 0.0380 (8) | 0.0357 (8) | 0.0022 (6) | 0.0002 (6) | 0.0046 (6) |
| C3 | 0.0398 (8) | 0.0368 (8) | 0.0457 (9) | 0.0065 (6) | −0.0034 (7) | −0.0034 (6) |
| C4 | 0.0369 (7) | 0.0427 (8) | 0.0346 (7) | 0.0054 (6) | −0.0030 (6) | −0.0040 (6) |
| C5 | 0.0512 (9) | 0.0533 (10) | 0.0399 (9) | 0.0082 (8) | −0.0058 (7) | −0.0118 (7) |
| C6 | 0.0588 (10) | 0.0682 (11) | 0.0312 (8) | 0.0108 (9) | −0.0013 (7) | −0.0079 (8) |
| C7 | 0.0531 (9) | 0.0626 (11) | 0.0319 (8) | 0.0079 (8) | 0.0049 (7) | 0.0053 (7) |
| C8 | 0.0429 (8) | 0.0451 (9) | 0.0349 (8) | 0.0033 (6) | 0.0040 (6) | 0.0024 (7) |
| C9 | 0.0360 (7) | 0.0418 (8) | 0.0295 (7) | 0.0037 (6) | −0.0001 (6) | 0.0000 (6) |
| C10 | 0.0496 (9) | 0.0584 (10) | 0.0490 (10) | 0.0130 (8) | −0.0069 (8) | 0.0009 (8) |
| C11 | 0.0583 (11) | 0.0913 (16) | 0.0553 (11) | 0.0106 (11) | −0.0155 (9) | −0.0012 (10) |
| C12 | 0.0872 (15) | 0.0552 (11) | 0.0587 (12) | −0.0077 (10) | 0.0127 (10) | 0.0164 (9) |
| O1W | 0.0992 (11) | 0.0548 (8) | 0.0715 (10) | 0.0047 (8) | 0.0365 (9) | 0.0061 (7) |
| O1—C1 | 1.2202 (17) | C6—C7 | 1.388 (3) |
| O2—C3 | 1.2193 (19) | C6—H6 | 0.9300 |
| O3—C2 | 1.4040 (18) | C7—C8 | 1.378 (2) |
| O3—H3 | 0.8200 | C7—H7 | 0.9300 |
| O4—C8 | 1.361 (2) | C8—C9 | 1.402 (2) |
| O4—C12 | 1.422 (2) | C10—C11 | 1.502 (2) |
| N1—C1 | 1.3537 (19) | C10—H10A | 0.9700 |
| N1—C9 | 1.3966 (18) | C10—H10B | 0.9700 |
| N1—H1N | 0.861 (14) | C11—H11A | 0.9600 |
| C1—C2 | 1.527 (2) | C11—H11B | 0.9600 |
| C2—C3 | 1.522 (2) | C11—H11C | 0.9600 |
| C2—C10 | 1.555 (2) | C12—H12A | 0.9600 |
| C3—C4 | 1.465 (2) | C12—H12B | 0.9600 |
| C4—C9 | 1.399 (2) | C12—H12C | 0.9600 |
| C4—C5 | 1.399 (2) | O1W—H1W | 0.923 (16) |
| C5—C6 | 1.371 (3) | O1W—H2W | 0.916 (16) |
| C5—H5 | 0.9300 | ||
| C2—O3—H3 | 109.5 | C8—C7—H7 | 119.5 |
| C8—O4—C12 | 118.23 (14) | C6—C7—H7 | 119.5 |
| C1—N1—C9 | 123.82 (13) | O4—C8—C7 | 125.75 (15) |
| C1—N1—H1N | 117.0 (12) | O4—C8—C9 | 114.89 (13) |
| C9—N1—H1N | 115.2 (12) | C7—C8—C9 | 119.34 (15) |
| O1—C1—N1 | 122.32 (14) | N1—C9—C4 | 121.80 (13) |
| O1—C1—C2 | 121.64 (13) | N1—C9—C8 | 118.71 (13) |
| N1—C1—C2 | 115.90 (12) | C4—C9—C8 | 119.41 (13) |
| O3—C2—C3 | 112.71 (13) | C11—C10—C2 | 114.01 (15) |
| O3—C2—C1 | 107.81 (12) | C11—C10—H10A | 108.8 |
| C3—C2—C1 | 112.89 (12) | C2—C10—H10A | 108.8 |
| O3—C2—C10 | 110.35 (13) | C11—C10—H10B | 108.8 |
| C3—C2—C10 | 104.65 (12) | C2—C10—H10B | 108.8 |
| C1—C2—C10 | 108.35 (13) | H10A—C10—H10B | 107.6 |
| O2—C3—C4 | 123.84 (15) | C10—C11—H11A | 109.5 |
| O2—C3—C2 | 119.69 (14) | C10—C11—H11B | 109.5 |
| C4—C3—C2 | 116.32 (13) | H11A—C11—H11B | 109.5 |
| C9—C4—C5 | 120.10 (14) | C10—C11—H11C | 109.5 |
| C9—C4—C3 | 118.46 (13) | H11A—C11—H11C | 109.5 |
| C5—C4—C3 | 121.38 (14) | H11B—C11—H11C | 109.5 |
| C6—C5—C4 | 119.83 (16) | O4—C12—H12A | 109.5 |
| C6—C5—H5 | 120.1 | O4—C12—H12B | 109.5 |
| C4—C5—H5 | 120.1 | H12A—C12—H12B | 109.5 |
| C5—C6—C7 | 120.20 (15) | O4—C12—H12C | 109.5 |
| C5—C6—H6 | 119.9 | H12A—C12—H12C | 109.5 |
| C7—C6—H6 | 119.9 | H12B—C12—H12C | 109.5 |
| C8—C7—C6 | 121.09 (16) | H1W—O1W—H2W | 95 (2) |
| C9—N1—C1—O1 | −165.15 (15) | C4—C5—C6—C7 | 0.2 (2) |
| C9—N1—C1—C2 | 19.1 (2) | C5—C6—C7—C8 | 0.4 (3) |
| O1—C1—C2—O3 | 22.8 (2) | C12—O4—C8—C7 | −0.1 (3) |
| N1—C1—C2—O3 | −161.35 (13) | C12—O4—C8—C9 | −178.93 (16) |
| O1—C1—C2—C3 | 147.98 (15) | C6—C7—C8—O4 | 179.85 (16) |
| N1—C1—C2—C3 | −36.19 (18) | C6—C7—C8—C9 | −1.4 (2) |
| O1—C1—C2—C10 | −96.60 (17) | C1—N1—C9—C4 | 0.9 (2) |
| N1—C1—C2—C10 | 79.22 (16) | C1—N1—C9—C8 | 177.65 (14) |
| O3—C2—C3—O2 | −26.4 (2) | C5—C4—C9—N1 | 175.61 (14) |
| C1—C2—C3—O2 | −148.87 (14) | C3—C4—C9—N1 | −1.8 (2) |
| C10—C2—C3—O2 | 93.51 (17) | C5—C4—C9—C8 | −1.1 (2) |
| O3—C2—C3—C4 | 157.87 (13) | C3—C4—C9—C8 | −178.52 (14) |
| C1—C2—C3—C4 | 35.42 (18) | O4—C8—C9—N1 | 3.8 (2) |
| C10—C2—C3—C4 | −82.20 (16) | C7—C8—C9—N1 | −175.08 (14) |
| O2—C3—C4—C9 | 167.10 (15) | O4—C8—C9—C4 | −179.40 (14) |
| C2—C3—C4—C9 | −17.4 (2) | C7—C8—C9—C4 | 1.7 (2) |
| O2—C3—C4—C5 | −10.3 (2) | O3—C2—C10—C11 | −58.1 (2) |
| C2—C3—C4—C5 | 165.20 (14) | C3—C2—C10—C11 | −179.62 (16) |
| C9—C4—C5—C6 | 0.1 (2) | C1—C2—C10—C11 | 59.70 (19) |
| C3—C4—C5—C6 | 177.47 (15) |
| H··· | ||||
| O3—H3···O1i | 0.82 | 2.35 | 2.9430 (17) | 130 |
| N1—H1 | 0.86 (1) | 2.01 (2) | 2.8438 (19) | 163 (2) |
| O1 | 0.92 (2) | 2.07 (2) | 2.9425 (19) | 158 (2) |
| O1 | 0.92 (2) | 2.15 (2) | 2.9401 (19) | 144 (2) |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O3—H3⋯O1i | 0.82 | 2.35 | 2.9430 (17) | 130 |
| N1—H1 | 0.86 (1) | 2.01 (2) | 2.8438 (19) | 163 (2) |
| O1 | 0.92 (2) | 2.07 (2) | 2.9425 (19) | 158 (2) |
| O1 | 0.92 (2) | 2.15 (2) | 2.9401 (19) | 144 (2) |
Symmetry codes: (i) ; (ii) ; (iii) .