Literature DB >> 25309256

Crystal structure of 8-hy-droxy-quinoline: a new monoclinic polymorph.

Raúl Castañeda1, Sofia A Antal1, Sergiu Draguta1, Tatiana V Timofeeva1, Victor N Khrustalev2.   

Abstract

In an attempt to grow 8-hy-droxy-quinoline-acetamino-phen co-crystals from equimolar amounts of conformers in a chloro-form-ethanol solvent mixture at room temperature, the title compound, C9H7NO, was obtained. The mol-ecule is planar, with the hy-droxy H atom forming an intra-molecular O-H⋯N hydrogen bond. In the crystal, mol-ecules form centrosymmetric dimers via two O-H⋯N hydrogen bonds. Thus, the hy-droxy H atoms are involved in bifurcated O-H⋯N hydrogen bonds, leading to the formation of a central planar four-membered N2H2 ring. The dimers are bound by inter-molecular π-π stacking [the shortest C⋯C distance is 3.2997 (17) Å] and C-H⋯π inter-actions into a three-dimensional framework. The crystal grown represents a new monoclinic polymorph in the space group P21/n. The mol-ecular structure of the present monoclinic polymorph is very similar to that of the ortho-rhom-bic polymorph (space group Fdd2) studied previously [Roychowdhury et al. (1978 ▶). Acta Cryst. B34, 1047-1048; Banerjee & Saha (1986 ▶). Acta Cryst. C42, 1408-1411]. The structures of the two polymorphs are distinguished by the different geometries of the hydrogen-bonded dimers, which in the crystal of the ortho-rhom-bic polymorph possess twofold axis symmetry, with the central N2H2 ring adopting a butterfly conformation.

Entities:  

Keywords:  8-hy­droxy­quinoline; crystal structure; hydrogen bonds; polymorphism

Year:  2014        PMID: 25309256      PMCID: PMC4186174          DOI: 10.1107/S1600536814016110

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background on cocrystallization of organic compounds, see: Bernstein (2002 ▶); Desiraju (2003 ▶); Dunitz (2003 ▶); Timofeeva et al. (2003 ▶); Aakeröy et al. (2009 ▶); Lemmerer et al. (2011 ▶). For cocrystallization of 8-hy­droxy­quinoline with different mol­ecules, see: Prout & Wheeler (1967 ▶); Castellano & Prout (1971 ▶); Liu & Meng (2006 ▶); Westcott et al. (2009 ▶). For crystal structure of the ortho­rhom­bic polymorph of 8-hy­droxy­quinoline, see: Roy­chowdhury et al. (1978 ▶); Banerjee & Saha (1986 ▶).

Experimental

Crystal data

C9H7NO M = 145.16 Monoclinic, a = 6.620 (3) Å b = 9.243 (4) Å c = 11.070 (4) Å β = 90.718 (6)° V = 677.3 (5) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 100 K 0.30 × 0.25 × 0.20 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2003 ▶) T min = 0.972, T max = 0.981 7049 measured reflections 1795 independent reflections 1494 reflections with I > 2σ(I) R int = 0.023

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.109 S = 1.08 1795 reflections 103 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.39 e Å−3 Δρmin = −0.20 e Å−3

Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536814016110/rk2430sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814016110/rk2430Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814016110/rk2430Isup3.cml Click here for additional data file. I . DOI: 10.1107/S1600536814016110/rk2430fig1.tif Mol­ecular structure of I. Displacement ellipsoids are presented at the 50% probability level. H atoms are depicted as small spheres of arbitrary radius. The intra­molecular O—H⋯N hydrogen bond is drawn by dashed line. Click here for additional data file. I . DOI: 10.1107/S1600536814016110/rk2430fig2.tif The centrosymmetric H–bonded dimers in the monoclinic polymorph of I. The hydrogen bonds are drawn by dashed lines. Click here for additional data file. I . DOI: 10.1107/S1600536814016110/rk2430fig3.tif The H–bonded dimers in the ortho­rhom­bic polymorph of I, in which the mol­ecules are related by the twofold axis. The hydrogen bonds are drawn by dashed lines. Click here for additional data file. I . DOI: 10.1107/S1600536814016110/rk2430fig4.tif A portion of crystal packing of the H–bonded dimers in the monoclinic polymorph of I. The hydrogen bonds are drawn by dashed lines. CCDC reference: 1013310 Additional supporting information: crystallographic information; 3D view; checkCIF report
C9H7NOF(000) = 304
Mr = 145.16Dx = 1.423 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 2841 reflections
a = 6.620 (3) Åθ = 4.2–34.9°
b = 9.243 (4) ŵ = 0.09 mm1
c = 11.070 (4) ÅT = 100 K
β = 90.718 (6)°Prism, colourless
V = 677.3 (5) Å30.30 × 0.25 × 0.20 mm
Z = 4
Bruker APEXII CCD diffractometer1795 independent reflections
Radiation source: fine–focus sealed tube1494 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.023
φ and ω scansθmax = 29.0°, θmin = 4.2°
Absorption correction: multi-scan (SADABS; Bruker, 2003)h = −9→9
Tmin = 0.972, Tmax = 0.981k = −12→12
7049 measured reflectionsl = −15→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: difference Fourier map
wR(F2) = 0.109H atoms treated by a mixture of independent and constrained refinement
S = 1.08w = 1/[σ2(Fo2) + (0.0558P)2 + 0.1943P] where P = (Fo2 + 2Fc2)/3
1795 reflections(Δ/σ)max = 0.001
103 parametersΔρmax = 0.39 e Å3
0 restraintsΔρmin = −0.20 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R–factor wR and goodness of fit S are based on F2, conventional R–factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R–factors(gt) etc. and is not relevant to the choice of reflections for refinement. R–factors based on F2 are statistically about twice as large as those based on F, and R–factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.34421 (12)0.32417 (9)1.07956 (7)0.0200 (2)
H10.423 (2)0.3920 (19)1.0538 (14)0.030*
N10.32084 (13)0.48141 (10)0.86794 (8)0.0156 (2)
C20.30597 (17)0.55312 (12)0.76494 (10)0.0176 (2)
H20.41920.60810.73980.021*
C30.13175 (17)0.55296 (12)0.68997 (10)0.0180 (2)
H30.12910.60660.61680.022*
C4−0.03295 (17)0.47463 (11)0.72420 (10)0.0166 (2)
H4−0.15190.47410.67530.020*
C4A−0.02507 (15)0.39431 (11)0.83296 (9)0.0139 (2)
C5−0.18735 (16)0.30848 (11)0.87370 (10)0.0161 (2)
H5−0.31030.30460.82860.019*
C6−0.16632 (16)0.23086 (12)0.97870 (10)0.0168 (2)
H6−0.27520.17261.00540.020*
C70.01393 (16)0.23605 (12)1.04765 (9)0.0159 (2)
H70.02600.18051.11960.019*
C80.17237 (16)0.32095 (11)1.01141 (9)0.0146 (2)
C8A0.15734 (15)0.40160 (11)0.90195 (9)0.0131 (2)
U11U22U33U12U13U23
O10.0147 (4)0.0215 (4)0.0238 (4)−0.0034 (3)−0.0053 (3)0.0075 (3)
N10.0139 (4)0.0140 (4)0.0190 (5)0.0000 (3)0.0010 (3)−0.0005 (3)
C20.0170 (5)0.0162 (5)0.0198 (5)−0.0027 (4)0.0025 (4)0.0002 (4)
C30.0230 (6)0.0165 (5)0.0147 (5)−0.0010 (4)−0.0002 (4)0.0016 (4)
C40.0180 (5)0.0160 (5)0.0158 (5)0.0002 (4)−0.0032 (4)−0.0011 (4)
C4A0.0139 (5)0.0126 (5)0.0152 (5)0.0005 (4)0.0002 (4)−0.0021 (4)
C50.0134 (5)0.0173 (5)0.0175 (5)−0.0016 (4)−0.0011 (4)−0.0019 (4)
C60.0147 (5)0.0168 (5)0.0190 (5)−0.0031 (4)0.0020 (4)−0.0013 (4)
C70.0168 (5)0.0156 (5)0.0154 (5)0.0004 (4)0.0002 (4)0.0013 (4)
C80.0133 (5)0.0138 (5)0.0166 (5)0.0017 (4)−0.0017 (4)−0.0015 (4)
C8A0.0122 (5)0.0115 (4)0.0157 (5)0.0012 (3)0.0008 (4)−0.0021 (4)
O1—C81.3575 (13)C4A—C51.4139 (15)
O1—H10.865 (17)C4A—C8A1.4224 (14)
N1—C21.3214 (14)C5—C61.3716 (16)
N1—C8A1.3667 (14)C5—H50.9500
C2—C31.4125 (16)C6—C71.4093 (15)
C2—H20.9500C6—H60.9500
C3—C41.3664 (16)C7—C81.3739 (15)
C3—H30.9500C7—H70.9500
C4—C4A1.4149 (15)C8—C8A1.4250 (15)
C4—H40.9500
C8—O1—H1109.6 (10)C6—C5—H5120.2
C2—N1—C8A117.24 (9)C4A—C5—H5120.2
N1—C2—C3123.92 (10)C5—C6—C7121.16 (10)
N1—C2—H2118.0C5—C6—H6119.4
C3—C2—H2118.0C7—C6—H6119.4
C4—C3—C2119.09 (10)C8—C7—C6120.38 (10)
C4—C3—H3120.5C8—C7—H7119.8
C2—C3—H3120.5C6—C7—H7119.8
C3—C4—C4A119.54 (10)O1—C8—C7119.19 (10)
C3—C4—H4120.2O1—C8—C8A120.68 (9)
C4A—C4—H4120.2C7—C8—C8A120.11 (9)
C5—C4A—C4123.08 (10)N1—C8A—C4A123.20 (9)
C5—C4A—C8A119.91 (10)N1—C8A—C8118.01 (9)
C4—C4A—C8A117.01 (9)C4A—C8A—C8118.79 (9)
C6—C5—C4A119.63 (10)
C8A—N1—C2—C30.76 (16)C2—N1—C8A—C4A−0.76 (15)
N1—C2—C3—C4−0.05 (17)C2—N1—C8A—C8178.60 (9)
C2—C3—C4—C4A−0.66 (16)C5—C4A—C8A—N1179.57 (9)
C3—C4—C4A—C5−178.83 (10)C4—C4A—C8A—N10.07 (15)
C3—C4—C4A—C8A0.64 (15)C5—C4A—C8A—C80.21 (14)
C4—C4A—C5—C6178.39 (10)C4—C4A—C8A—C8−179.28 (9)
C8A—C4A—C5—C6−1.07 (15)O1—C8—C8A—N10.19 (15)
C4A—C5—C6—C70.60 (16)C7—C8—C8A—N1−178.25 (9)
C5—C6—C7—C80.77 (16)O1—C8—C8A—C4A179.58 (9)
C6—C7—C8—O1179.90 (9)C7—C8—C8A—C4A1.14 (15)
C6—C7—C8—C8A−1.63 (16)
D—H···AD—HH···AD···AD—H···A
O1—H1···N10.865 (17)2.310 (15)2.7596 (15)112.5 (12)
O1—H1···N1i0.865 (17)2.228 (17)2.9072 (14)135.3 (13)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1—H1⋯N10.865 (17)2.310 (15)2.7596 (15)112.5 (12)
O1—H1⋯N1i 0.865 (17)2.228 (17)2.9072 (14)135.3 (13)

Symmetry code: (i) .

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