Literature DB >> 26021216

Comparison of PCA approaches for very large group ICA.

Vince D Calhoun1, Rogers F Silva2, Tülay Adalı3, Srinivas Rachakonda4.   

Abstract

Large data sets are becoming more common in fMRI and, with the advent of faster pulse sequences, memory efficient strategies for data reduction via principal component analysis (PCA) turn out to be extremely useful, especially for widely used approaches like group independent component analysis (ICA). In this commentary, we discuss results and limitations from a recent paper on the topic and attempt to provide a more complete perspective on available approaches as well as discussing various issues to consider related to PCA for very large group ICA. We also provide an analysis of computation time, memory use, and number of dataloads for a variety of approaches under multiple scenarios of small and extremely large data sets.
Copyright © 2015 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Independent component analysis; Memory; Principal component analysis; RAM

Mesh:

Year:  2015        PMID: 26021216      PMCID: PMC4554805          DOI: 10.1016/j.neuroimage.2015.05.047

Source DB:  PubMed          Journal:  Neuroimage        ISSN: 1053-8119            Impact factor:   6.556


  16 in total

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Authors:  V D Calhoun; T Adali; G D Pearlson; J J Pekar
Journal:  Hum Brain Mapp       Date:  2001-11       Impact factor: 5.038

2.  Tensorial extensions of independent component analysis for multisubject FMRI analysis.

Authors:  C F Beckmann; S M Smith
Journal:  Neuroimage       Date:  2005-01-08       Impact factor: 6.556

3.  Multiband multislice GE-EPI at 7 tesla, with 16-fold acceleration using partial parallel imaging with application to high spatial and temporal whole-brain fMRI.

Authors:  Steen Moeller; Essa Yacoub; Cheryl A Olman; Edward Auerbach; John Strupp; Noam Harel; Kâmil Uğurbil
Journal:  Magn Reson Med       Date:  2010-05       Impact factor: 4.668

4.  Making data sharing work: the FCP/INDI experience.

Authors:  Maarten Mennes; Bharat B Biswal; F Xavier Castellanos; Michael P Milham
Journal:  Neuroimage       Date:  2012-10-30       Impact factor: 6.556

5.  SimTB, a simulation toolbox for fMRI data under a model of spatiotemporal separability.

Authors:  Erik B Erhardt; Elena A Allen; Yonghua Wei; Tom Eichele; Vince D Calhoun
Journal:  Neuroimage       Date:  2011-12-08       Impact factor: 6.556

6.  Capturing inter-subject variability with group independent component analysis of fMRI data: a simulation study.

Authors:  Elena A Allen; Erik B Erhardt; Yonghua Wei; Tom Eichele; Vince D Calhoun
Journal:  Neuroimage       Date:  2011-10-14       Impact factor: 6.556

Review 7.  Multisubject independent component analysis of fMRI: a decade of intrinsic networks, default mode, and neurodiagnostic discovery.

Authors:  Vince D Calhoun; Tülay Adalı
Journal:  IEEE Rev Biomed Eng       Date:  2012

8.  A baseline for the multivariate comparison of resting-state networks.

Authors:  Elena A Allen; Erik B Erhardt; Eswar Damaraju; William Gruner; Judith M Segall; Rogers F Silva; Martin Havlicek; Srinivas Rachakonda; Jill Fries; Ravi Kalyanam; Andrew M Michael; Arvind Caprihan; Jessica A Turner; Tom Eichele; Steven Adelsheim; Angela D Bryan; Juan Bustillo; Vincent P Clark; Sarah W Feldstein Ewing; Francesca Filbey; Corey C Ford; Kent Hutchison; Rex E Jung; Kent A Kiehl; Piyadasa Kodituwakku; Yuko M Komesu; Andrew R Mayer; Godfrey D Pearlson; John P Phillips; Joseph R Sadek; Michael Stevens; Ursina Teuscher; Robert J Thoma; Vince D Calhoun
Journal:  Front Syst Neurosci       Date:  2011-02-04

9.  Independent component analysis for brain FMRI does indeed select for maximal independence.

Authors:  Vince D Calhoun; Vamsi K Potluru; Ronald Phlypo; Rogers F Silva; Barak A Pearlmutter; Arvind Caprihan; Sergey M Plis; Tülay Adalı
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Review 10.  A statistically motivated framework for simulation of stochastic data fusion models applied to multimodal neuroimaging.

Authors:  Rogers F Silva; Sergey M Plis; Tülay Adalı; Vince D Calhoun
Journal:  Neuroimage       Date:  2014-04-18       Impact factor: 6.556

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  7 in total

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Authors:  Bradley T Baker; Anees Abrol; Rogers F Silva; Eswar Damaraju; Anand D Sarwate; Vince D Calhoun; Sergey M Plis
Journal:  Neuroimage       Date:  2018-11-05       Impact factor: 6.556

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Journal:  Neuroimage       Date:  2015-12-04       Impact factor: 6.556

3.  Memory Efficient PCA Methods for Large Group ICA.

Authors:  Srinivas Rachakonda; Rogers F Silva; Jingyu Liu; Vince D Calhoun
Journal:  Front Neurosci       Date:  2016-02-02       Impact factor: 4.677

4.  Parallel group independent component analysis for massive fMRI data sets.

Authors:  Shaojie Chen; Lei Huang; Huitong Qiu; Mary Beth Nebel; Stewart H Mostofsky; James J Pekar; Martin A Lindquist; Ani Eloyan; Brian S Caffo
Journal:  PLoS One       Date:  2017-03-09       Impact factor: 3.240

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6.  Classification of schizophrenia and bipolar patients using static and dynamic resting-state fMRI brain connectivity.

Authors:  Barnaly Rashid; Mohammad R Arbabshirani; Eswar Damaraju; Mustafa S Cetin; Robyn Miller; Godfrey D Pearlson; Vince D Calhoun
Journal:  Neuroimage       Date:  2016-04-23       Impact factor: 6.556

7.  Studies on Chromatographic Fingerprint and Fingerprinting Profile-Efficacy Relationship of Saxifraga stolonifera Meerb.

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  7 in total

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