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Literature DB >> 26018169

Dark Matter of the Biosphere: the Amazing World of Bacteriophage Diversity.

Abstract

Bacteriophages are the most abundant biological entities in the biosphere, and this dynamic and old population is, not surprisingly, highly diverse genetically. Relative to bacterial genomics, phage genomics has advanced slowly, and a higher-resolution picture of the phagosphere is only just emerging. This view reveals substantial diversity even among phages known to infect a common host strain, but the relationships are complex, with mosaic genomic architectures generated by illegitimate recombination over a long period of evolutionary history.

Entities: Species

Mesh：

Year: 2015 PMID： 26018169 PMCID： PMC4524254 DOI： 10.1128/JVI.01340-15

Source DB: PubMed Journal: J Virol ISSN： 0022-538X Impact factor: 5.103

20 in total

Review 1. Bacteriophages: evolution of the majority.

Authors: Roger W Hendrix
Journal: Theor Popul Biol Date: 2002-06 Impact factor: 1.570

Review 2. The secret lives of mycobacteriophages.

Authors: Graham F Hatfull
Journal: Adv Virus Res Date: 2012 Impact factor: 9.937

3. Evolutionary relationships among diverse bacteriophages and prophages: all the world's a phage.

Authors: R W Hendrix; M C Smith; R N Burns; M E Ford; G F Hatfull
Journal: Proc Natl Acad Sci U S A Date: 1999-03-02 Impact factor: 11.205

4. The diversity and biogeography of soil bacterial communities.

Authors: Noah Fierer; Robert B Jackson
Journal: Proc Natl Acad Sci U S A Date: 2006-01-09 Impact factor: 11.205

Review 5. Marine viruses--major players in the global ecosystem.

Authors: Curtis A Suttle
Journal: Nat Rev Microbiol Date: 2007-10 Impact factor: 60.633

Review 6. Bacteriophages and their genomes.

Authors: Graham F Hatfull; Roger W Hendrix
Journal: Curr Opin Virol Date: 2011-10 Impact factor: 7.090

7. Sampling natural viral communities from soil for culture-independent analyses.

Authors: Kurt E Williamson; K Eric Wommack; Mark Radosevich
Journal: Appl Environ Microbiol Date: 2003-11 Impact factor: 4.792

8. Contrasting life strategies of viruses that infect photo- and heterotrophic bacteria, as revealed by viral tagging.

Authors: Li Deng; Ann Gregory; Suzan Yilmaz; Bonnie T Poulos; Philip Hugenholtz; Matthew B Sullivan
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9. BRED: a simple and powerful tool for constructing mutant and recombinant bacteriophage genomes.

Authors: Laura J Marinelli; Mariana Piuri; Zuzana Swigonová; Amrita Balachandran; Lauren M Oldfield; Julia C van Kessel; Graham F Hatfull
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10. Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity.

Authors: Welkin H Pope; Charles A Bowman; Daniel A Russell; Deborah Jacobs-Sera; David J Asai; Steven G Cresawn; William R Jacobs; Roger W Hendrix; Jeffrey G Lawrence; Graham F Hatfull
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2. Coevolution mechanisms that adapt viruses to genetic code variations implemented in their hosts.

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3. IMG/VR v3: an integrated ecological and evolutionary framework for interrogating genomes of uncultivated viruses.

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Review 5. Pharmacologically Aware Phage Therapy: Pharmacodynamic and Pharmacokinetic Obstacles to Phage Antibacterial Action in Animal and Human Bodies.

Authors: Krystyna Dąbrowska; Stephen T Abedon
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Review 6. The Discovery, Mechanisms, and Evolutionary Impact of Anti-CRISPRs.

Authors: Adair L Borges; Alan R Davidson; Joseph Bondy-Denomy
Journal: Annu Rev Virol Date: 2017-07-27 Impact factor: 10.431

7. Characterization and Genome Analysis of a Novel Mu-like Phage VW-6B Isolated from the Napahai Plateau Wetland of China.

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Journal: Curr Microbiol Date: 2020-11-04 Impact factor: 2.188

Review 8. Cross-Regulation between Bacteria and Phages at a Posttranscriptional Level.

Authors: Shoshy Altuvia; Gisela Storz; Kai Papenfort
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Review 9. Mycobacteriophages.

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Journal: Microbiol Spectr Date: 2018-10

10. Prophylaxis of Mycobacterium tuberculosis H37Rv Infection in a Preclinical Mouse Model via Inhalation of Nebulized Bacteriophage D29.

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