Literature DB >> 26014110

The role of machine learning in neuroimaging for drug discovery and development.

Orla M Doyle1, Mitul A Mehta2, Michael J Brammer2.   

Abstract

Neuroimaging has been identified as a potentially powerful probe for the in vivo study of drug effects on the brain with utility across several phases of drug development spanning preclinical and clinical investigations. Specifically, neuroimaging can provide insight into drug penetration and distribution, target engagement, pharmacodynamics, mechanistic action and potential indicators of clinical efficacy. In this review, we focus on machine learning approaches for neuroimaging which enable us to make predictions at the individual level based on the distributed effects across the whole brain. Crucially, these approaches can be trained on data from one study and applied to an independent study and, unlike group-level statistics, can be readily use to assess the generalisability to unseen data. In this review, we present examples and suggestions for how machine learning could help answer fundamental questions spanning the drug discovery pipeline: (1) Who should I recruit for this study? (2) What should I measure and when should I measure it? (3) How does the pharmacological agent behave using an experimental medicine model?, and (4) How does a compound differ from and/or resemble existing compounds? Specifically, we present studies from the literature and we suggest areas for the focus of future development. Further refinement and tailoring of machine learning techniques may help realise their tremendous potential for drug discovery and drug validation.

Keywords:  Drug discovery; Experimental medicine models; Machine learning; Neuroimaging; Personalised medicine; Probabilistic models; Stratification

Mesh:

Year:  2015        PMID: 26014110     DOI: 10.1007/s00213-015-3968-0

Source DB:  PubMed          Journal:  Psychopharmacology (Berl)        ISSN: 0033-3158            Impact factor:   4.530


  47 in total

1.  Machine learning and data mining: strategies for hypothesis generation.

Authors:  M A Oquendo; E Baca-Garcia; A Artés-Rodríguez; F Perez-Cruz; H C Galfalvy; H Blasco-Fontecilla; D Madigan; N Duan
Journal:  Mol Psychiatry       Date:  2012-01-10       Impact factor: 15.992

Review 2.  Everything you never wanted to know about circular analysis, but were afraid to ask.

Authors:  Nikolaus Kriegeskorte; Martin A Lindquist; Thomas E Nichols; Russell A Poldrack; Edward Vul
Journal:  J Cereb Blood Flow Metab       Date:  2010-06-23       Impact factor: 6.200

Review 3.  Bridging paradigms: hybrid mechanistic-discriminative predictive models.

Authors:  Orla M Doyle; Krasimira Tsaneva-Atansaova; James Harte; Paul A Tiffin; Peter Tino; Vanessa Díaz-Zuccarini
Journal:  IEEE Trans Biomed Eng       Date:  2013-02-04       Impact factor: 4.538

Review 4.  Lost in translation: animal models and clinical trials in cancer treatment.

Authors:  Isabella Wy Mak; Nathan Evaniew; Michelle Ghert
Journal:  Am J Transl Res       Date:  2014-01-15       Impact factor: 4.060

Review 5.  What is the value of human FMRI in CNS drug development?

Authors:  Richard G Wise; Cliff Preston
Journal:  Drug Discov Today       Date:  2010-09-15       Impact factor: 7.851

6.  Automatic classification of patients with Alzheimer's disease from structural MRI: a comparison of ten methods using the ADNI database.

Authors:  Rémi Cuingnet; Emilie Gerardin; Jérôme Tessieras; Guillaume Auzias; Stéphane Lehéricy; Marie-Odile Habert; Marie Chupin; Habib Benali; Olivier Colliot
Journal:  Neuroimage       Date:  2010-06-11       Impact factor: 6.556

7.  Quantifying the attenuation of the ketamine pharmacological magnetic resonance imaging response in humans: a validation using antipsychotic and glutamatergic agents.

Authors:  O M Doyle; S De Simoni; A J Schwarz; C Brittain; O G O'Daly; S C R Williams; M A Mehta
Journal:  J Pharmacol Exp Ther       Date:  2013-01-31       Impact factor: 4.030

8.  Test-retest reliability of the BOLD pharmacological MRI response to ketamine in healthy volunteers.

Authors:  S De Simoni; A J Schwarz; O G O'Daly; A F Marquand; C Brittain; C Gonzales; S Stephenson; S C R Williams; M A Mehta
Journal:  Neuroimage       Date:  2012-09-23       Impact factor: 6.556

9.  Comparative behavioral and neurochemical activities of cholinergic antagonists in rats.

Authors:  F P Bymaster; I Heath; J C Hendrix; H E Shannon
Journal:  J Pharmacol Exp Ther       Date:  1993-10       Impact factor: 4.030

10.  Predicting progression of Alzheimer's disease using ordinal regression.

Authors:  Orla M Doyle; Eric Westman; Andre F Marquand; Patrizia Mecocci; Bruno Vellas; Magda Tsolaki; Iwona Kłoszewska; Hilkka Soininen; Simon Lovestone; Steve C R Williams; Andrew Simmons
Journal:  PLoS One       Date:  2014-08-20       Impact factor: 3.240

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  13 in total

1.  Post-acquisition processing confounds in brain volumetric quantification of white matter hyperintensities.

Authors:  Ahmed A Bahrani; Omar M Al-Janabi; Erin L Abner; Shoshana H Bardach; Richard J Kryscio; Donna M Wilcock; Charles D Smith; Gregory A Jicha
Journal:  J Neurosci Methods       Date:  2019-08-10       Impact factor: 2.390

2.  Toward Robust Anxiety Biomarkers: A Machine Learning Approach in a Large-Scale Sample.

Authors:  Emily A Boeke; Avram J Holmes; Elizabeth A Phelps
Journal:  Biol Psychiatry Cogn Neurosci Neuroimaging       Date:  2019-06-21

3.  Artificial intelligence, physiological genomics, and precision medicine.

Authors:  Anna Marie Williams; Yong Liu; Kevin R Regner; Fabrice Jotterand; Pengyuan Liu; Mingyu Liang
Journal:  Physiol Genomics       Date:  2018-01-26       Impact factor: 3.107

4.  Predicting personality from network-based resting-state functional connectivity.

Authors:  Alessandra D Nostro; Veronika I Müller; Deepthi P Varikuti; Rachel N Pläschke; Felix Hoffstaedter; Robert Langner; Kaustubh R Patil; Simon B Eickhoff
Journal:  Brain Struct Funct       Date:  2018-03-23       Impact factor: 3.270

Review 5.  Building better biomarkers: brain models in translational neuroimaging.

Authors:  Choong-Wan Woo; Luke J Chang; Martin A Lindquist; Tor D Wager
Journal:  Nat Neurosci       Date:  2017-02-23       Impact factor: 24.884

6.  Effect sizes and test-retest reliability of the fMRI-based neurologic pain signature.

Authors:  Xiaochun Han; Yoni K Ashar; Philip Kragel; Bogdan Petre; Victoria Schelkun; Lauren Y Atlas; Luke J Chang; Marieke Jepma; Leonie Koban; Elizabeth A Reynolds Losin; Mathieu Roy; Choong-Wan Woo; Tor D Wager
Journal:  Neuroimage       Date:  2021-12-20       Impact factor: 6.556

7.  NeuroCrypt: Machine Learning Over Encrypted Distributed Neuroimaging Data.

Authors:  Nipuna Senanayake; Robert Podschwadt; Daniel Takabi; Vince D Calhoun; Sergey M Plis
Journal:  Neuroinformatics       Date:  2021-05-04

Review 8.  Artificial Intelligence for Mental Health Care: Clinical Applications, Barriers, Facilitators, and Artificial Wisdom.

Authors:  Ellen E Lee; John Torous; Munmun De Choudhury; Colin A Depp; Sarah A Graham; Ho-Cheol Kim; Martin P Paulus; John H Krystal; Dilip V Jeste
Journal:  Biol Psychiatry Cogn Neurosci Neuroimaging       Date:  2021-02-08

9.  Brain Metabolism Changes in Patients Infected with HTLV-1.

Authors:  Manuel Schütze; Luiz C F Romanelli; Daniela V Rosa; Anna B F Carneiro-Proietti; Rodrigo Nicolato; Marco A Romano-Silva; Michael Brammer; Débora M de Miranda
Journal:  Front Mol Neurosci       Date:  2017-02-28       Impact factor: 5.639

10.  The cortical thickness phenotype of individuals with DISC1 translocation resembles schizophrenia.

Authors:  Orla M Doyle; Catherine Bois; Pippa Thomson; Liana Romaniuk; Brandon Whitcher; Steven C R Williams; Federico E Turkheimer; Hreinn Stefansson; Andrew M McIntosh; Mitul A Mehta; Stephen M Lawrie
Journal:  J Clin Invest       Date:  2015-08-24       Impact factor: 14.808

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