Literature DB >> 26005999

Prescribed nanoparticle cluster architectures and low-dimensional arrays built using octahedral DNA origami frames.

Ye Tian1, Tong Wang2, Wenyan Liu1, Huolin L Xin1, Huilin Li3, Yonggang Ke4, William M Shih4, Oleg Gang1.   

Abstract

Three-dimensional mesoscale clusters that are formed from nanoparticles spatially arranged in pre-determined positions can be thought of as mesoscale analogues of molecules. These nanoparticle architectures could offer tailored properties due to collective effects, but developing a general platform for fabricating such clusters is a significant challenge. Here, we report a strategy for assembling three-dimensional nanoparticle clusters that uses a molecular frame designed with encoded vertices for particle placement. The frame is a DNA origami octahedron and can be used to fabricate clusters with various symmetries and particle compositions. Cryo-electron microscopy is used to uncover the structure of the DNA frame and to reveal that the nanoparticles are spatially coordinated in the prescribed manner. We show that the DNA frame and one set of nanoparticles can be used to create nanoclusters with different chiroptical activities. We also show that the octahedra can serve as programmable interparticle linkers, allowing one- and two-dimensional arrays to be assembled with designed particle arrangements.

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Year:  2015        PMID: 26005999      PMCID: PMC5282466          DOI: 10.1038/nnano.2015.105

Source DB:  PubMed          Journal:  Nat Nanotechnol        ISSN: 1748-3387            Impact factor:   39.213


  47 in total

1.  Six-helix bundles designed from DNA.

Authors:  Frederick Mathieu; Shiping Liao; Jens Kopatsch; Tong Wang; Chengde Mao; Nadrian C Seeman
Journal:  Nano Lett       Date:  2005-04       Impact factor: 11.189

2.  Folding DNA to create nanoscale shapes and patterns.

Authors:  Paul W K Rothemund
Journal:  Nature       Date:  2006-03-16       Impact factor: 49.962

3.  DNA-guided crystallization of colloidal nanoparticles.

Authors:  Dmytro Nykypanchuk; Mathew M Maye; Daniel van der Lelie; Oleg Gang
Journal:  Nature       Date:  2008-01-31       Impact factor: 49.962

4.  DNA-linked nanoparticle building blocks for programmable matter.

Authors:  Jin-Woo Kim; Jeong-Hwan Kim; Russell Deaton
Journal:  Angew Chem Int Ed Engl       Date:  2011-09-02       Impact factor: 15.336

5.  The surface plasmon modes of self-assembled gold nanocrystals.

Authors:  Steven J Barrow; Xingzhan Wei; Julia S Baldauf; Alison M Funston; Paul Mulvaney
Journal:  Nat Commun       Date:  2012       Impact factor: 14.919

6.  Cryo-EM structure of a 3D DNA-origami object.

Authors:  Xiao-Chen Bai; Thomas G Martin; Sjors H W Scheres; Hendrik Dietz
Journal:  Proc Natl Acad Sci U S A       Date:  2012-11-19       Impact factor: 11.205

7.  A general approach to DNA-programmable atom equivalents.

Authors:  Chuan Zhang; Robert J Macfarlane; Kaylie L Young; Chung Hang J Choi; Liangliang Hao; Evelyn Auyeung; Guoliang Liu; Xiaozhu Zhou; Chad A Mirkin
Journal:  Nat Mater       Date:  2013-05-19       Impact factor: 43.841

Review 8.  Flexibility of DNA.

Authors:  P J Hagerman
Journal:  Annu Rev Biophys Biophys Chem       Date:  1988

9.  Hierarchical self-assembly of DNA into symmetric supramolecular polyhedra.

Authors:  Yu He; Tao Ye; Min Su; Chuan Zhang; Alexander E Ribbe; Wen Jiang; Chengde Mao
Journal:  Nature       Date:  2008-03-13       Impact factor: 49.962

10.  A general strategy for the DNA-mediated self-assembly of functional nanoparticles into heterogeneous systems.

Authors:  Yugang Zhang; Fang Lu; Kevin G Yager; Daniel van der Lelie; Oleg Gang
Journal:  Nat Nanotechnol       Date:  2013-10-20       Impact factor: 39.213

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  37 in total

1.  Diamond family of nanoparticle superlattices.

Authors:  Wenyan Liu; Miho Tagawa; Huolin L Xin; Tong Wang; Hamed Emamy; Huilin Li; Kevin G Yager; Francis W Starr; Alexei V Tkachenko; Oleg Gang
Journal:  Science       Date:  2016-02-05       Impact factor: 47.728

2.  Lattice engineering through nanoparticle-DNA frameworks.

Authors:  Ye Tian; Yugang Zhang; Tong Wang; Huolin L Xin; Huilin Li; Oleg Gang
Journal:  Nat Mater       Date:  2016-02-22       Impact factor: 43.841

3.  DNA-linked superlattices get into shape.

Authors:  Bert Nickel; Tim Liedl
Journal:  Nat Mater       Date:  2015-08       Impact factor: 43.841

4.  Mighty linkers.

Authors: 
Journal:  Nat Mater       Date:  2015-08       Impact factor: 43.841

5.  DNA-imprinted polymer nanoparticles with monodispersity and prescribed DNA-strand patterns.

Authors:  Tuan Trinh; Chenyi Liao; Violeta Toader; Maciej Barłóg; Hassan S Bazzi; Jianing Li; Hanadi F Sleiman
Journal:  Nat Chem       Date:  2017-12-04       Impact factor: 24.427

6.  Reconfigurable Three-Dimensional Gold Nanorod Plasmonic Nanostructures Organized on DNA Origami Tripod.

Authors:  Pengfei Zhan; Palash K Dutta; Pengfei Wang; Gang Song; Mingjie Dai; Shu-Xia Zhao; Zhen-Gang Wang; Peng Yin; Wei Zhang; Baoquan Ding; Yonggang Ke
Journal:  ACS Nano       Date:  2017-01-09       Impact factor: 15.881

7.  Automated Sequence Design of 3D Polyhedral Wireframe DNA Origami with Honeycomb Edges.

Authors:  Hyungmin Jun; Tyson R Shepherd; Kaiming Zhang; William P Bricker; Shanshan Li; Wah Chiu; Mark Bathe
Journal:  ACS Nano       Date:  2019-01-24       Impact factor: 15.881

8.  Position Accuracy of Gold Nanoparticles on DNA Origami Structures Studied with Small-Angle X-ray Scattering.

Authors:  Caroline Hartl; Kilian Frank; Heinz Amenitsch; Stefan Fischer; Tim Liedl; Bert Nickel
Journal:  Nano Lett       Date:  2018-03-06       Impact factor: 11.189

Review 9.  Interfacial interactions of SERS-active noble metal nanostructures with functional ligands for diagnostic analysis of protein cancer markers.

Authors:  Han-Jung Ryu; Won Kyu Lee; Yoon Hyuck Kim; Jae-Seung Lee
Journal:  Mikrochim Acta       Date:  2021-04-12       Impact factor: 5.833

10.  Shape and Interhelical Spacing of DNA Origami Nanostructures Studied by Small-Angle X-ray Scattering.

Authors:  Stefan Fischer; Caroline Hartl; Kilian Frank; Joachim O Rädler; Tim Liedl; Bert Nickel
Journal:  Nano Lett       Date:  2016-06-08       Impact factor: 11.189

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