Literature DB >> 25998807

Facilitating quality control for spectra assignments of small organic molecules: nmrshiftdb2--a free in-house NMR database with integrated LIMS for academic service laboratories.

Stefan Kuhn1, Nils E Schlörer2.   

Abstract

nmrshiftdb2 supports with its laboratory information management system the integration of an electronic lab administration and management into academic NMR facilities. Also, it offers the setup of a local database, while full access to nmrshiftdb2's World Wide Web database is granted. This freely available system allows on the one hand the submission of orders for measurement, transfers recorded data automatically or manually, and enables download of spectra via web interface, as well as the integrated access to prediction, search, and assignment tools of the NMR database for lab users. On the other hand, for the staff and lab administration, flow of all orders can be supervised; administrative tools also include user and hardware management, a statistic functionality for accounting purposes, and a 'QuickCheck' function for assignment control, to facilitate quality control of assignments submitted to the (local) database. Laboratory information management system and database are based on a web interface as front end and are therefore independent of the operating system in use.
Copyright © 2015 John Wiley & Sons, Ltd.

Keywords:  LIMS; NMR; NMR database; assignment quality control; lab administration system; nmrshiftdb2; prediction; structure verification

Year:  2015        PMID: 25998807     DOI: 10.1002/mrc.4263

Source DB:  PubMed          Journal:  Magn Reson Chem        ISSN: 0749-1581            Impact factor:   2.447


  10 in total

1.  NMReDATA, a standard to report the NMR assignment and parameters of organic compounds.

Authors:  Marion Pupier; Jean-Marc Nuzillard; Julien Wist; Nils E Schlörer; Stefan Kuhn; Mate Erdelyi; Christoph Steinbeck; Antony J Williams; Craig Butts; Tim D W Claridge; Bozhana Mikhova; Wolfgang Robien; Hesam Dashti; Hamid R Eghbalnia; Christophe Farès; Christian Adam; Pavel Kessler; Fabrice Moriaud; Mikhail Elyashberg; Dimitris Argyropoulos; Manuel Pérez; Patrick Giraudeau; Roberto R Gil; Paul Trevorrow; Damien Jeannerat
Journal:  Magn Reson Chem       Date:  2018-05-16       Impact factor: 2.447

2.  PeakForest: a multi-platform digital infrastructure for interoperable metabolite spectral data and metadata management.

Authors:  Nils Paulhe; Cécile Canlet; Annelaure Damont; Lindsay Peyriga; Stéphanie Durand; Catherine Deborde; Sandra Alves; Stephane Bernillon; Thierry Berton; Raphael Bir; Alyssa Bouville; Edern Cahoreau; Delphine Centeno; Robin Costantino; Laurent Debrauwer; Alexis Delabrière; Christophe Duperier; Sylvain Emery; Amelie Flandin; Ulli Hohenester; Daniel Jacob; Charlotte Joly; Cyril Jousse; Marie Lagree; Nadia Lamari; Marie Lefebvre; Claire Lopez-Piffet; Bernard Lyan; Mickael Maucourt; Carole Migne; Marie-Francoise Olivier; Estelle Rathahao-Paris; Pierre Petriacq; Julie Pinelli; Léa Roch; Pierrick Roger; Simon Roques; Jean-Claude Tabet; Marie Tremblay-Franco; Mounir Traïkia; Anna Warnet; Vanessa Zhendre; Dominique Rolin; Fabien Jourdan; Etienne Thévenot; Annick Moing; Emilien Jamin; François Fenaille; Christophe Junot; Estelle Pujos-Guillot; Franck Giacomoni
Journal:  Metabolomics       Date:  2022-06-14       Impact factor: 4.747

Review 3.  Review on natural products databases: where to find data in 2020.

Authors:  Maria Sorokina; Christoph Steinbeck
Journal:  J Cheminform       Date:  2020-04-03       Impact factor: 5.514

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Authors:  Marcus Miethke; Marco Pieroni; Tilmann Weber; Mark Brönstrup; Peter Hammann; Ludovic Halby; Paola B Arimondo; Philippe Glaser; Bertrand Aigle; Helge B Bode; Rui Moreira; Yanyan Li; Andriy Luzhetskyy; Marnix H Medema; Jean-Luc Pernodet; Marc Stadler; José Rubén Tormo; Olga Genilloud; Andrew W Truman; Kira J Weissman; Eriko Takano; Stefano Sabatini; Evi Stegmann; Heike Brötz-Oesterhelt; Wolfgang Wohlleben; Myriam Seemann; Martin Empting; Anna K H Hirsch; Brigitta Loretz; Claus-Michael Lehr; Alexander Titz; Jennifer Herrmann; Timo Jaeger; Silke Alt; Thomas Hesterkamp; Mathias Winterhalter; Andrea Schiefer; Kenneth Pfarr; Achim Hoerauf; Heather Graz; Michael Graz; Mika Lindvall; Savithri Ramurthy; Anders Karlén; Maarten van Dongen; Hrvoje Petkovic; Andreas Keller; Frédéric Peyrane; Stefano Donadio; Laurent Fraisse; Laura J V Piddock; Ian H Gilbert; Heinz E Moser; Rolf Müller
Journal:  Nat Rev Chem       Date:  2021-08-19       Impact factor: 34.571

5.  The DP5 probability, quantification and visualisation of structural uncertainty in single molecules.

Authors:  Alexander Howarth; Jonathan M Goodman
Journal:  Chem Sci       Date:  2022-02-25       Impact factor: 9.825

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Authors:  David S Wishart; Zinat Sayeeda; Zachary Budinski; AnChi Guo; Brian L Lee; Mark Berjanskii; Manoj Rout; Harrison Peters; Raynard Dizon; Robert Mah; Claudia Torres-Calzada; Mickel Hiebert-Giesbrecht; Dorna Varshavi; Dorsa Varshavi; Eponine Oler; Dana Allen; Xuan Cao; Vasuk Gautam; Andrew Maras; Ella F Poynton; Pegah Tavangar; Vera Yang; Jeffrey A van Santen; Rajarshi Ghosh; Saurav Sarma; Eleanor Knutson; Victoria Sullivan; Amy M Jystad; Ryan Renslow; Lloyd W Sumner; Roger G Linington; John R Cort
Journal:  Nucleic Acids Res       Date:  2022-01-07       Impact factor: 16.971

7.  In Situ Characterization of Mixtures of Linear and Branched Hydrocarbons Confined within Porous Media Using 2D DQF-COSY NMR Spectroscopy.

Authors:  Qingyuan Zheng; Mick D Mantle; Andrew J Sederman; Timothy A Baart; Constant M Guédon; Lynn F Gladden
Journal:  Anal Chem       Date:  2022-02-12       Impact factor: 8.008

Review 8.  The exposome paradigm to predict environmental health in terms of systemic homeostasis and resource balance based on NMR data science.

Authors:  Jun Kikuchi; Shunji Yamada
Journal:  RSC Adv       Date:  2021-09-13       Impact factor: 4.036

Review 9.  The value of universally available raw NMR data for transparency, reproducibility, and integrity in natural product research.

Authors:  James B McAlpine; Shao-Nong Chen; Andrei Kutateladze; John B MacMillan; Giovanni Appendino; Andersson Barison; Mehdi A Beniddir; Maique W Biavatti; Stefan Bluml; Asmaa Boufridi; Mark S Butler; Robert J Capon; Young H Choi; David Coppage; Phillip Crews; Michael T Crimmins; Marie Csete; Pradeep Dewapriya; Joseph M Egan; Mary J Garson; Grégory Genta-Jouve; William H Gerwick; Harald Gross; Mary Kay Harper; Precilia Hermanto; James M Hook; Luke Hunter; Damien Jeannerat; Nai-Yun Ji; Tyler A Johnson; David G I Kingston; Hiroyuki Koshino; Hsiau-Wei Lee; Guy Lewin; Jie Li; Roger G Linington; Miaomiao Liu; Kerry L McPhail; Tadeusz F Molinski; Bradley S Moore; Joo-Won Nam; Ram P Neupane; Matthias Niemitz; Jean-Marc Nuzillard; Nicholas H Oberlies; Fernanda M M Ocampos; Guohui Pan; Ronald J Quinn; D Sai Reddy; Jean-Hugues Renault; José Rivera-Chávez; Wolfgang Robien; Carla M Saunders; Thomas J Schmidt; Christoph Seger; Ben Shen; Christoph Steinbeck; Hermann Stuppner; Sonja Sturm; Orazio Taglialatela-Scafati; Dean J Tantillo; Robert Verpoorte; Bin-Gui Wang; Craig M Williams; Philip G Williams; Julien Wist; Jian-Min Yue; Chen Zhang; Zhengren Xu; Charlotte Simmler; David C Lankin; Jonathan Bisson; Guido F Pauli
Journal:  Nat Prod Rep       Date:  2018-07-13       Impact factor: 13.423

10.  Rapid prediction of NMR spectral properties with quantified uncertainty.

Authors:  Eric Jonas; Stefan Kuhn
Journal:  J Cheminform       Date:  2019-08-06       Impact factor: 5.514

  10 in total

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